Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04729 and BL02688
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:58
# Commandline: needle
# -asequence dna-align/BSNT_04729___paiB.1.5803.seq
# -bsequence dna-align/BL02688___paiB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04729___paiB-BL02688___paiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04729___paiB-BL02688___paiB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04729___paiB
# 2: BL02688___paiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity: 507/633 (80.1%)
# Similarity: 507/633 (80.1%)
# Gaps: 24/633 ( 3.8%)
# Score: 2081.5
#
#
#=======================================
BSNT_04729___ 1 ATGTATATTCCAAAATATTTTAAAGTCACAAATGCTGAAGAAATTTGGAA 50
|||||||||||||||||||||||||||..|||||||||.|||||||.|.|
BL02688___pai 1 ATGTATATTCCAAAATATTTTAAAGTCGAAAATGCTGATGAAATTTTGGA 50
BSNT_04729___ 51 TTTTGTACAAGAAAACTCCTTTGGTACGGTTGTCACAACAGAACAAGGAA 100
||||||.|||.|||||||.|||||.|||.||||.||.|||||||||||.|
BL02688___pai 51 TTTTGTCCAAAAAAACTCTTTTGGCACGATTGTTACGACAGAACAAGGGA 100
BSNT_04729___ 101 AACCAATTGCCACACATTTGCCGTTAGGATTCAATAAAAAAGACGATCAT 150
|.|||||.||.||.||||||||.|||||..||||||||||||.||||.||
BL02688___pai 101 AGCCAATCGCGACTCATTTGCCTTTAGGGCTCAATAAAAAAGGCGATGAT 150
BSNT_04729___ 151 TACTATATTACGGGGCATTTCGCTTATGGAAATCCTCA-GTGGAGAACGT 199
||||||||.||.||.|||.|||||||||||||.||.|| |||| ||||.|
BL02688___pai 151 TACTATATCACTGGCCATATCGCTTATGGAAACCCGCAGGTGG-GAACTT 199
BSNT_04729___ 200 TTGAAGCCTGTGAAGATGTGCTTGTGATGTTTCAGGGACCGCACGCTTAT 249
|.|||.|||||.|||||||||||||.|||||||||||.||||||||.|||
BL02688___pai 200 TGGAAACCTGTAAAGATGTGCTTGTCATGTTTCAGGGGCCGCACGCATAT 249
BSNT_04729___ 250 ATTTCTTCTTCCTGGTATTCGCGCGAAAATGTTCCGACGTGGAATTATCA 299
||||||||||||||||||..||..||..|||||||.||.|||||||||||
BL02688___pai 250 ATTTCTTCTTCCTGGTATGGGCATGAGGATGTTCCAACATGGAATTATCA 299
BSNT_04729___ 300 GGCTGTCCACATGTATGGAAAAGCAAGTATGTTAGAGAAAGATGAATTAG 349
.||.|||||.||.||.||.||||||||.||..||||||.||||||||||.
BL02688___pai 300 AGCCGTCCATATATACGGTAAAGCAAGCATTCTAGAGAGAGATGAATTAA 349
BSNT_04729___ 350 CAGAAGAATTAACAATCATGCTGGAGAAATACGAAAAACATCGTGACAAT 399
.|||||||||||||||||||.||||.||||||||.||.|||||.||.|||
BL02688___pai 350 TAGAAGAATTAACAATCATGATGGAAAAATACGAGAAGCATCGGGAAAAT 399
BSNT_04729___ 400 CCTGTTTTATGGGATAAGCTTTCTCCAAAACTCTTAGAACGTGAATTGAA 449
||..|||||||||||||.||||||||..||||.||.||..|..||.||||
BL02688___pai 400 CCAATTTTATGGGATAACCTTTCTCCTCAACTTTTGGAGAGACAACTGAA 449
BSNT_04729___ 450 AGGTATCGTTGGATTTAAGATTAAGGTGGAAGATATTCAAGCGGCATATA 499
||..||.||.||.||||||||||||||||||||.|||||.||.|||||||
BL02688___pai 450 AGCGATTGTCGGGTTTAAGATTAAGGTGGAAGACATTCAGGCTGCATATA 499
BSNT_04729___ 500 AATTAAGCCAGAACCGAAATGAAACGGATTATATGAACATTATTGAACAG 549
|||||||.||||||||||||||.||.||.||.||||||||.|||||.||.
BL02688___pai 500 AATTAAGTCAGAACCGAAATGATACAGACTACATGAACATCATTGATCAA 549
BSNT_04729___ 550 TTGCAAAATGAAGAAAATCCAAATGCAAAACAAATGGCAGAACTGATGGA 599
|||||||||||||.|.|||||.||.|..|.|||.||||||.|..||||.|
BL02688___pai 550 TTGCAAAATGAAGGAGATCCAGATTCGGAGCAATTGGCAGCAGCGATGAA 599
BSNT_04729___ 600 AAA--------TAAATTCAAAAAGCAAATATAA 624
||| .||||| ||
BL02688___pai 600 AAAGAGGCTGGAAAATT-----AG--------- 618
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