Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04729 and BL02688

See Amino acid alignment / Visit BSNT_04729 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:58
# Commandline: needle
#    -asequence dna-align/BSNT_04729___paiB.1.5803.seq
#    -bsequence dna-align/BL02688___paiB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04729___paiB-BL02688___paiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04729___paiB-BL02688___paiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04729___paiB
# 2: BL02688___paiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity:     507/633 (80.1%)
# Similarity:   507/633 (80.1%)
# Gaps:          24/633 ( 3.8%)
# Score: 2081.5
# 
#
#=======================================

BSNT_04729___      1 ATGTATATTCCAAAATATTTTAAAGTCACAAATGCTGAAGAAATTTGGAA     50
                     |||||||||||||||||||||||||||..|||||||||.|||||||.|.|
BL02688___pai      1 ATGTATATTCCAAAATATTTTAAAGTCGAAAATGCTGATGAAATTTTGGA     50

BSNT_04729___     51 TTTTGTACAAGAAAACTCCTTTGGTACGGTTGTCACAACAGAACAAGGAA    100
                     ||||||.|||.|||||||.|||||.|||.||||.||.|||||||||||.|
BL02688___pai     51 TTTTGTCCAAAAAAACTCTTTTGGCACGATTGTTACGACAGAACAAGGGA    100

BSNT_04729___    101 AACCAATTGCCACACATTTGCCGTTAGGATTCAATAAAAAAGACGATCAT    150
                     |.|||||.||.||.||||||||.|||||..||||||||||||.||||.||
BL02688___pai    101 AGCCAATCGCGACTCATTTGCCTTTAGGGCTCAATAAAAAAGGCGATGAT    150

BSNT_04729___    151 TACTATATTACGGGGCATTTCGCTTATGGAAATCCTCA-GTGGAGAACGT    199
                     ||||||||.||.||.|||.|||||||||||||.||.|| |||| ||||.|
BL02688___pai    151 TACTATATCACTGGCCATATCGCTTATGGAAACCCGCAGGTGG-GAACTT    199

BSNT_04729___    200 TTGAAGCCTGTGAAGATGTGCTTGTGATGTTTCAGGGACCGCACGCTTAT    249
                     |.|||.|||||.|||||||||||||.|||||||||||.||||||||.|||
BL02688___pai    200 TGGAAACCTGTAAAGATGTGCTTGTCATGTTTCAGGGGCCGCACGCATAT    249

BSNT_04729___    250 ATTTCTTCTTCCTGGTATTCGCGCGAAAATGTTCCGACGTGGAATTATCA    299
                     ||||||||||||||||||..||..||..|||||||.||.|||||||||||
BL02688___pai    250 ATTTCTTCTTCCTGGTATGGGCATGAGGATGTTCCAACATGGAATTATCA    299

BSNT_04729___    300 GGCTGTCCACATGTATGGAAAAGCAAGTATGTTAGAGAAAGATGAATTAG    349
                     .||.|||||.||.||.||.||||||||.||..||||||.||||||||||.
BL02688___pai    300 AGCCGTCCATATATACGGTAAAGCAAGCATTCTAGAGAGAGATGAATTAA    349

BSNT_04729___    350 CAGAAGAATTAACAATCATGCTGGAGAAATACGAAAAACATCGTGACAAT    399
                     .|||||||||||||||||||.||||.||||||||.||.|||||.||.|||
BL02688___pai    350 TAGAAGAATTAACAATCATGATGGAAAAATACGAGAAGCATCGGGAAAAT    399

BSNT_04729___    400 CCTGTTTTATGGGATAAGCTTTCTCCAAAACTCTTAGAACGTGAATTGAA    449
                     ||..|||||||||||||.||||||||..||||.||.||..|..||.||||
BL02688___pai    400 CCAATTTTATGGGATAACCTTTCTCCTCAACTTTTGGAGAGACAACTGAA    449

BSNT_04729___    450 AGGTATCGTTGGATTTAAGATTAAGGTGGAAGATATTCAAGCGGCATATA    499
                     ||..||.||.||.||||||||||||||||||||.|||||.||.|||||||
BL02688___pai    450 AGCGATTGTCGGGTTTAAGATTAAGGTGGAAGACATTCAGGCTGCATATA    499

BSNT_04729___    500 AATTAAGCCAGAACCGAAATGAAACGGATTATATGAACATTATTGAACAG    549
                     |||||||.||||||||||||||.||.||.||.||||||||.|||||.||.
BL02688___pai    500 AATTAAGTCAGAACCGAAATGATACAGACTACATGAACATCATTGATCAA    549

BSNT_04729___    550 TTGCAAAATGAAGAAAATCCAAATGCAAAACAAATGGCAGAACTGATGGA    599
                     |||||||||||||.|.|||||.||.|..|.|||.||||||.|..||||.|
BL02688___pai    550 TTGCAAAATGAAGGAGATCCAGATTCGGAGCAATTGGCAGCAGCGATGAA    599

BSNT_04729___    600 AAA--------TAAATTCAAAAAGCAAATATAA    624
                     |||        .|||||     ||         
BL02688___pai    600 AAAGAGGCTGGAAAATT-----AG---------    618


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