Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06246 and BL02686
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:12
# Commandline: needle
# -asequence dna-align/BSNT_06246___yybA.1.5803.seq
# -bsequence dna-align/BL02686___yybA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06246___yybA-BL02686___yybA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06246___yybA-BL02686___yybA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06246___yybA
# 2: BL02686___yybA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity: 341/468 (72.9%)
# Similarity: 341/468 (72.9%)
# Gaps: 30/468 ( 6.4%)
# Score: 1207.0
#
#
#=======================================
BSNT_06246___ 1 ATGAATGATATTTTGCGTGAGATCGGCATGATAGCAAGAGCGTTGGATTC 50
|||||.||||||.|||||||.||.||.|||||.||..||||.||||||||
BL02686___yyb 1 ATGAAGGATATTCTGCGTGAAATTGGAATGATTGCCCGAGCATTGGATTC 50
BSNT_06246___ 51 CATAAGCAACATCGAATTTAAAGATTTGGACTTAACAAGAGGGCAGTATC 100
.||||||||.||||||||||||||....|||.|.||||.||||||.|||.
BL02686___yyb 51 TATAAGCAATATCGAATTTAAAGAACATGACCTGACAAAAGGGCAATATT 100
BSNT_06246___ 101 TCTATCTCGTACGTATATACGAAAATCCGGGAATTATTCAAGAAAAATTG 150
|.||.||.||.||.||||.||||||.||||||||.|||||.||.||..||
BL02686___yyb 101 TGTACCTTGTCCGAATATGCGAAAACCCGGGAATCATTCAGGAGAAGCTG 150
BSNT_06246___ 151 GCGGAAATGATAAAAGTGGACCGGACAACGGCCGCGCGGGCCATTAAGAA 200
||.||.|||||.|||||.|||.||||.||.||.||.||.||.||.||.||
BL02686___yyb 151 GCTGAGATGATTAAAGTAGACAGGACCACCGCAGCCCGTGCAATAAAAAA 200
BSNT_06246___ 201 GCTGGAAATGCAGGGATTTATTCAA-----AAATTGCCGGATGAGCAAAA 245
.||.||||||.||||.||||||.|| |.|| |||||.||.||
BL02686___yyb 201 ACTTGAAATGAAGGGCTTTATTGAACGGAGAGAT-----GATGAACATAA 245
BSNT_06246___ 246 TAAAAAAATAAAAAAACTGTTCCCGACTGAGAAAGGGAAA-AAGGTATAT 294
.|||||||||||||||||.||.|||||.|| ||||||||| .||||||.|
BL02686___yyb 246 CAAAAAAATAAAAAAACTTTTTCCGACGGA-AAAGGGAAATGAGGTATTT 294
BSNT_06246___ 295 CCATTGTTAAGAAGAGAAGGAGAACATTCCACGGAA----GTAGCCTTGT 340
||.||..|||.|||||||...||.||||| ||| ||.||.||..
BL02686___yyb 295 CCTTTTATAAAAAGAGAAAATGACCATTC----GAATCGTGTGGCATTAG 340
BSNT_06246___ 341 CCGGTTTTACTTCAGA---GGAAAAGGAAACCATTTCTGCA--CTCCTTC 385
..||.|| |||.|| ||||..|||.|.|| |||.|| ||.||||
BL02686___yyb 341 AGGGATT---TTCCGAGGGGGAAGCGGAGATCA--TCTTCAATCTTCTTC 385
BSNT_06246___ 386 ATAGAGTGAGGAAGAATATAGAACGTGATTGGGAATATGTGAAGAAGGGG 435
|.|||||.||.||.|||.|||||...||.|||||||..|||||.||||||
BL02686___yyb 386 AAAGAGTAAGAAAAAATGTAGAAAAGGACTGGGAATTCGTGAAAAAGGGG 435
BSNT_06246___ 436 AACAAAAGGGATTATTAA 453
|||||.||..||||||.|
BL02686___yyb 436 AACAAGAGAAATTATTGA 453
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