Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03011 and BL02666
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_03011___yngC.1.5803.seq
# -bsequence dna-align/BL02666___yngC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03011___yngC-BL02666___yngC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03011___yngC-BL02666___yngC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03011___yngC
# 2: BL02666___yngC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity: 429/608 (70.6%)
# Similarity: 429/608 (70.6%)
# Gaps: 31/608 ( 5.1%)
# Score: 1433.0
#
#
#=======================================
BSNT_03011___ 1 GTGGGCAGTTTGATAAGCGAA----ATTTTAACATGGCTGA-CGAACATG 45
.||||.||..| ||.||| |||||||..||||||| |||.| |.
BL02666___yng 1 ATGGGAAGCAT----AGTGAATGATATTTTAATGTGGCTGACCGATC-TT 45
BSNT_03011___ 46 GGATATGCGGGTATTGCGATTGGGTTAATGATTGAAATTATTCCGAGTGA 95
||.|||...||.||||||||.||.||||||||.|||||.||.||||||||
BL02666___yng 46 GGCTATTTCGGCATTGCGATCGGTTTAATGATCGAAATCATCCCGAGTGA 95
BSNT_03011___ 96 GATTGTATTAGCTTATGGAGGCTATATGGTATCGGAAGGCACGATTGGTT 145
.||.|||.|.||.||.||.||.||.|||||.||..|.|||.|||||....
BL02666___yng 96 AATCGTACTCGCCTACGGCGGATACATGGTCTCAAACGGCTCGATTACGA 145
BSNT_03011___ 146 TTATTGGCGCAATTATTGCGGGTGTTATCGGGGGCACCATTGCCCAGATC 195
|.|..|||||..|.|||||.||.||.||||||||.||.|||||.||..|.
BL02666___yng 146 TAACAGGCGCCGTGATTGCCGGCGTCATCGGGGGAACGATTGCTCAATTG 195
BSNT_03011___ 196 TTTATTTACTGGATCGGCCGCTATGGCGGCAGGCCATTTCTGGACAAATA 245
|||.|.||||||||||||..|||.|||||..|.||.|||.|..|||||||
BL02666___yng 196 TTTTTATACTGGATCGGCTACTACGGCGGACGTCCGTTTTTATACAAATA 245
BSNT_03011___ 246 CGGGAAGTATTTATTGATTAAAAAGCATCATATCGACATGTCGGAAAACT 295
|||.||.||.||||||||..||||||||||.||..|.|...|.|||||.|
BL02666___yng 246 CGGAAAATACTTATTGATCCAAAAGCATCACATTCAAACAGCCGAAAAAT 295
BSNT_03011___ 296 GGTTTCAGAAATACGGCGCCGGAGTTGTCTTCTCGGCTCGTTTTATACCG 345
|||||.||||||||||||..||.||.|||||.||.||.||.||.||.||.
BL02666___yng 296 GGTTTGAGAAATACGGCGGAGGCGTCGTCTTTTCTGCCCGCTTCATTCCC 345
BSNT_03011___ 346 GTTGTCAGACATGCCATATCCATTCCGGCAGGTATTGCCAGAATGCCTTT 395
||.||||||||.|||||.|||||||||||.||.|||||.|.||||||..|
BL02666___yng 346 GTGGTCAGACACGCCATCTCCATTCCGGCCGGCATTGCGAAAATGCCGAT 395
BSNT_03011___ 396 TCTCAAATTTGTGGTACTGACTGTGCTTGCTATCATTCCATGGTCTATTC 445
|.|.|||||...||..|||||.|||||.||.|||||.||.|||||.||.|
BL02666___yng 396 TTTAAAATTCACGGGTCTGACCGTGCTGGCCATCATACCGTGGTCGATAC 445
BSNT_03011___ 446 TGTTTGTTTATTTAGGCATACAGCTAGGAAGCCAGTGGGATGATGTTGAG 495
||||.||.|||.|.|||.|||||||.||.||||.||||||..|||||||.
BL02666___yng 446 TGTTCGTCTATCTCGGCGTACAGCTCGGCAGCCGGTGGGACCATGTTGAA 495
BSNT_03011___ 496 AATATAGCAGGCACTTATACAACACCGATTATGATATTGGCTGTTGTCG- 544
|||.|||||.|.||.||.||.||.|||||.|||.|...||| |.||
BL02666___yng 496 AATGTAGCAAGAACGTACACGACTCCGATCATGCTCGGGGC----GGCGG 541
BSNT_03011___ 545 ---TGATAGCCCTTTATTTTGTGA-TTAAGAAAC-GTACAGCCATATTTA 589
||||....||.|||||.| || |.||.|||| |..||| |
BL02666___yng 542 CTATGATCATTCTGTATTTCG-GACTCAAAAAACTGCGCAG--------A 582
BSNT_03011___ 590 AACGATAG 597
|| |||.
BL02666___yng 583 AA--ATAA 588
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