Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03008 and BL02663

See Amino acid alignment / Visit BSNT_03008 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_03008___yngA.1.5803.seq
#    -bsequence dna-align/BL02663___yngA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03008___yngA-BL02663___yngA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03008___yngA-BL02663___yngA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03008___yngA
# 2: BL02663___yngA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity:     272/463 (58.7%)
# Similarity:   272/463 (58.7%)
# Gaps:          83/463 (17.9%)
# Score: 738.0
# 
#
#=======================================

BSNT_03008___      1 ATGACTGCCACTCGCATCTTTTATGAAGGGAGGTCCGTTACGCTGAAAGA     50
                                           |||||                 .|||.|
BL02663___yng      1 ----------------------ATGAA-----------------CAAAAA     11

BSNT_03008___     51 AAAAAT----AAAGACCTTAGGCCGTTTTTGCACCGTAGGCGTCGGCAAT     96
                     |||.||    |.|..|.||    |||||..|.||.||.||.|.|||.||.
BL02663___yng     12 AAACATCCCCACACTCGTT----CGTTTCGGGACAGTCGGAGCCGGGAAC     57

BSNT_03008___     97 ACGCTGATAGATTTTGGTGTCTTCTTTCTTCTTAC--CGCTTGTCATGTC    144
                     ||.||..|.|||||.|..||.||.||.||.|||||  ||||  .||.|||
BL02663___yng     58 ACACTCGTTGATTTCGTCGTGTTTTTCCTCCTTACGTCGCT--CCACGTC    105

BSNT_03008___    145 TCTTATCTGCCGGCGCAGATCTGCTCCTATACTGCAGGTATCGTCAACAG    194
                     .|.||.|||.|.||.|||.|.|..||||||.|.|||||..|.|..|||||
BL02663___yng    106 CCCTACCTGGCCGCACAGTTGTTTTCCTATTCGGCAGGCGTGGCAAACAG    155

BSNT_03008___    195 CTATGTGTGGAACCGGAATTGGACGTTTTGTGTGAAACGTAAGGC---TG    241
                     ||||.|.|||||.||||..|||||||||...||.|||...||.||   ||
BL02663___yng    156 CTATATCTGGAATCGGACATGGACGTTTCAAGTAAAAGAAAAAGCGCATG    205

BSNT_03008___    242 ACG-GGAAAGAGATCGTGCGTTTTCTCATGATTAATATTGCCGCGTCGGG    290
                     .|| ||||    |||||.||.|||.|||||||.|||.||||.||..||||
BL02663___yng    206 GCGCGGAA----ATCGTCCGGTTTATCATGATCAATCTTGCAGCAGCGGG    251

BSNT_03008___    291 -GATCACCTTTTTGCTGCTTTATTTGTTTCAAAATTGCGG-CTGCTCGCT    338
                      |.| ||.|||.|.||.||.||..|.||||||||...||| ||| ||.||
BL02663___yng    252 CGCT-ACATTTGTCCTTCTGTACATTTTTCAAAAAGCCGGCCTG-TCCCT    299

BSNT_03008___    339 TTTGGTGAGTAAGCTCGCCGCCACTATCGGCGGAATGATGATGAATTTTA    388
                     |||..|.||.|||.|..||||.||..|||..||||||...||.||.||||
BL02663___yng    300 TTTTATCAGCAAGATGTCCGCAACAGTCGCAGGAATGGCCATCAACTTTA    349

BSNT_03008___    389 TCGGAAACCGAATCTGGGTATTTGGG-GATTCACTGAAAAAC---ATACA    434
                     .|||||||  ||.|      |||||| |.|||    ||.|||   ..|||
BL02663___yng    350 CCGGAAAC--AAGC------TTTGGGTGTTTC----AAGAACCCGGCACA    387

BSNT_03008___    435 GGATCAGGAGTGA    447
                     |..|||..|    
BL02663___yng    388 GATTCATAA----    396


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