Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03008 and BL02663
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_03008___yngA.1.5803.seq
# -bsequence dna-align/BL02663___yngA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03008___yngA-BL02663___yngA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03008___yngA-BL02663___yngA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03008___yngA
# 2: BL02663___yngA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity: 272/463 (58.7%)
# Similarity: 272/463 (58.7%)
# Gaps: 83/463 (17.9%)
# Score: 738.0
#
#
#=======================================
BSNT_03008___ 1 ATGACTGCCACTCGCATCTTTTATGAAGGGAGGTCCGTTACGCTGAAAGA 50
||||| .|||.|
BL02663___yng 1 ----------------------ATGAA-----------------CAAAAA 11
BSNT_03008___ 51 AAAAAT----AAAGACCTTAGGCCGTTTTTGCACCGTAGGCGTCGGCAAT 96
|||.|| |.|..|.|| |||||..|.||.||.||.|.|||.||.
BL02663___yng 12 AAACATCCCCACACTCGTT----CGTTTCGGGACAGTCGGAGCCGGGAAC 57
BSNT_03008___ 97 ACGCTGATAGATTTTGGTGTCTTCTTTCTTCTTAC--CGCTTGTCATGTC 144
||.||..|.|||||.|..||.||.||.||.||||| |||| .||.|||
BL02663___yng 58 ACACTCGTTGATTTCGTCGTGTTTTTCCTCCTTACGTCGCT--CCACGTC 105
BSNT_03008___ 145 TCTTATCTGCCGGCGCAGATCTGCTCCTATACTGCAGGTATCGTCAACAG 194
.|.||.|||.|.||.|||.|.|..||||||.|.|||||..|.|..|||||
BL02663___yng 106 CCCTACCTGGCCGCACAGTTGTTTTCCTATTCGGCAGGCGTGGCAAACAG 155
BSNT_03008___ 195 CTATGTGTGGAACCGGAATTGGACGTTTTGTGTGAAACGTAAGGC---TG 241
||||.|.|||||.||||..|||||||||...||.|||...||.|| ||
BL02663___yng 156 CTATATCTGGAATCGGACATGGACGTTTCAAGTAAAAGAAAAAGCGCATG 205
BSNT_03008___ 242 ACG-GGAAAGAGATCGTGCGTTTTCTCATGATTAATATTGCCGCGTCGGG 290
.|| |||| |||||.||.|||.|||||||.|||.||||.||..||||
BL02663___yng 206 GCGCGGAA----ATCGTCCGGTTTATCATGATCAATCTTGCAGCAGCGGG 251
BSNT_03008___ 291 -GATCACCTTTTTGCTGCTTTATTTGTTTCAAAATTGCGG-CTGCTCGCT 338
|.| ||.|||.|.||.||.||..|.||||||||...||| ||| ||.||
BL02663___yng 252 CGCT-ACATTTGTCCTTCTGTACATTTTTCAAAAAGCCGGCCTG-TCCCT 299
BSNT_03008___ 339 TTTGGTGAGTAAGCTCGCCGCCACTATCGGCGGAATGATGATGAATTTTA 388
|||..|.||.|||.|..||||.||..|||..||||||...||.||.||||
BL02663___yng 300 TTTTATCAGCAAGATGTCCGCAACAGTCGCAGGAATGGCCATCAACTTTA 349
BSNT_03008___ 389 TCGGAAACCGAATCTGGGTATTTGGG-GATTCACTGAAAAAC---ATACA 434
.||||||| ||.| |||||| |.||| ||.||| ..|||
BL02663___yng 350 CCGGAAAC--AAGC------TTTGGGTGTTTC----AAGAACCCGGCACA 387
BSNT_03008___ 435 GGATCAGGAGTGA 447
|..|||..|
BL02663___yng 388 GATTCATAA---- 396
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