Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01978 and BL02661

See Amino acid alignment / Visit BSNT_01978 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_01978___yjcG.1.5803.seq
#    -bsequence dna-align/BL02661___yjcG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01978___yjcG-BL02661___yjcG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01978___yjcG-BL02661___yjcG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01978___yjcG
# 2: BL02661___yjcG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 531
# Identity:     375/531 (70.6%)
# Similarity:   375/531 (70.6%)
# Gaps:          36/531 ( 6.8%)
# Score: 1247.0
# 
#
#=======================================

BSNT_01978___      1 ATGAAATACGGAATCGTTTTATTTCCATCAAAAAAGCTTCAAGACCTTGC     50
                     |||||||||||.||.||..||||||||||||||||.|||||.|||.||||
BL02661___yjc      1 ATGAAATACGGTATTGTGCTATTTCCATCAAAAAAACTTCAGGACATTGC     50

BSNT_01978___     51 AAACTCTTACAGAAAGCGCTATGACCCAAGCTACTCTCTAATCCCGCCTC    100
                     |||.||.|||.||||.|||||||||||.|..|||.||.||||.|||||.|
BL02661___yjc     51 AAATTCCTACCGAAAACGCTATGACCCGAATTACGCTTTAATTCCGCCCC    100

BSNT_01978___    101 ATTTGACGCTGAGAGCATCCTTTGAA---TGCGCGGAGGAGA----AAGC    143
                     |..|.||..|.|||.|..|.||||||   |..|..||.||||    |.||
BL02661___yjc    101 ACCTTACATTAAGAACGCCTTTTGAAGTGTCTGAAGACGAGATCTCAGGC    150

BSNT_01978___    144 GGATCAGCTCGTATCACATTTAAGAAACATCGCAAAAGAG-TCCCACC--    190
                     |       ||||...|||.||.|||.|..|..|||||||| |...|||  
BL02661___yjc    151 G-------TCGTCCGACACTTGAGAGAGCTTTCAAAAGAGCTGAAACCGG    193

BSNT_01978___    191 -CACTCGTTCTCAAAATGACAAAATACAGCTCATTTGCGCCTGTCAATAA    239
                      |||    .||.||.||.|||||||.|||.||.|||||.||.||||||||
BL02661___yjc    194 TCAC----GCTGAAGATTACAAAATTCAGTTCCTTTGCCCCCGTCAATAA    239

BSNT_01978___    240 TGTCATTTACATCAAAGCAGAACCGACGGAAGAGTTAAAAACA-CTCAAT    288
                     ||||||||||||.|||||.||||||||.||.||.|| .|..|| ||..||
BL02661___yjc    240 TGTCATTTACATGAAAGCCGAACCGACAGAGGAATT-GATGCAGCTTCAT    288

BSNT_01978___    289 GAAAAGCTATACACCGGTGTGTTGGCAGGAGAACAGGAATATAATTTTGT    338
                     |||||..|.||||.|||.||.||||.||...|||..|||||....|||||
BL02661___yjc    289 GAAAAAATGTACAGCGGCGTTTTGGAAGACAAACCCGAATACGCGTTTGT    338

BSNT_01978___    339 TCCGCATGTGACGGTCGGCCAAAATCTTTCCGACGATGAGCATTCAGATG    388
                     |||.|||||.||.||||..|||||.||.||.||.|||||||||||.||.|
BL02661___yjc    339 TCCCCATGTCACAGTCGCACAAAAGCTGTCAGATGATGAGCATTCCGACG    388

BSNT_01978___    389 TGCTGGGACA-ATTAAAAATGCAG-GAAGTGTCGCATGAAGAAATCGTTG    436
                     |.||.|| || ..|.|||||| || ||.|.|||.||.||||||.||.|.|
BL02661___yjc    389 TCCTCGG-CACGCTGAAAATG-AGAGACGCGTCACACGAAGAAGTCATCG    436

BSNT_01978___    437 ACCGTTTCCACTTGCTTTACCAGCTGGAAAACGGATCGTGGACAGTATAT    486
                     ||||.||.|||.||||||||||..||||.||||||||.|||||.||.|||
BL02661___yjc    437 ACCGCTTTCACCTGCTTTACCAATTGGACAACGGATCATGGACCGTCTAT    486

BSNT_01978___    487 GAAACCTTCTTGCTAGGCAGAG-GAGAATAA    516
                     |||||.||..|..|||| ||.| ||      
BL02661___yjc    487 GAAACTTTTATTTTAGG-AGCGTGA------    510


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