Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01981 and BL02660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:31
# Commandline: needle
# -asequence dna-align/BSNT_01981___yjcI.1.5803.seq
# -bsequence dna-align/BL02660___yjcI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01981___yjcI-BL02660___yjcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01981___yjcI-BL02660___yjcI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01981___yjcI
# 2: BL02660___yjcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1178
# Identity: 872/1178 (74.0%)
# Similarity: 872/1178 (74.0%)
# Gaps: 85/1178 ( 7.2%)
# Score: 3219.0
#
#
#=======================================
BSNT_01981___ 1 TTGAAAAGGGAAGGTGTCAGCTATATGTCACAGCACGTTGAAACGAAATT 50
|||.|..|.||.||..||||.|...|
BL02660___yjc 1 ------------------------ATGACTGAACATGTACAAACAACGCT 26
BSNT_01981___ 51 AGCTCAAATTGGGAACCGTAGCGATGAAGTCACGGGAACAGTGAGTGCTC 100
.||.|||||.||.|||||.||.||.|||.|.||.|||||.||.|.|.|||
BL02660___yjc 27 GGCGCAAATCGGCAACCGCAGTGACGAAATAACCGGAACCGTCAATCCTC 76
BSNT_01981___ 101 CTATCTATTTATCAACAGCATACCGCCACAGAGGGATCGGAGAATCTACC 150
|..|.|||||.||..|.||.|||.|.||||.|||.|||||.|||||.||.
BL02660___yjc 77 CCGTTTATTTCTCTTCTGCGTACAGGCACAAAGGAATCGGGGAATCCACA 126
BSNT_01981___ 151 GGATTTGATTATGTCCGCACAAAAAATCCGACACGCCAGCTTGTTGAGGA 200
|||||||||||..|.||||||||||||||||||.|.||||||||.||.||
BL02660___yjc 127 GGATTTGATTACATTCGCACAAAAAATCCGACAAGACAGCTTGTAGAAGA 176
BSNT_01981___ 201 CGCGATCGCTAACTTAGAA-----AACGGCGCGAGAGGGC-TTGCCTTTA 244
.||.|||||.||..||||| ||| |||| ||| ||||.||.|
BL02660___yjc 177 TGCAATCGCGAAACTAGAAGGGGGAAC-GCGC-----GGCTTTGCGTTCA 220
BSNT_01981___ 245 GTTCGGGAATGGCTGCTATCCAAACGATTATGGCGCTGTTTAAAAGCGGA 294
||||.||.||||||||.||.||.|||||.|||||.||||||.|||||||.
BL02660___yjc 221 GTTCTGGTATGGCTGCCATTCAGACGATCATGGCTCTGTTTCAAAGCGGG 270
BSNT_01981___ 295 GATGAACTGATCGTTTCATCGGACCTATATGGCGGCACGTACCGTTTATT 344
|||||.||.|||||||||||.||..||||.||.||.||.|||||..|.||
BL02660___yjc 271 GATGAGCTCATCGTTTCATCCGATTTATACGGGGGAACATACCGCCTTTT 320
BSNT_01981___ 345 TGAAAATGAATGGAAAAAATACGGATTG-ACTTTTCATTATGATGA--TT 391
||||||.||||||||.|||||||||.|| .|||||.| ||.||||| ||
BL02660___yjc 321 TGAAAACGAATGGAAGAAATACGGACTGCGCTTTTTA-TACGATGATTTT 369
BSNT_01981___ 392 TCAGCGATGAGGACTGT-TTACGCTCTAAGATTACGCCGAATACAAAAGC 440
||| ||.||.|||||| |.|.| ||.||.||.|||...|||||.||.||
BL02660___yjc 370 TCA--GACGAAGACTGTATCAAG-TCGAAAATCACGGACAATACGAAGGC 416
BSNT_01981___ 441 GGTGTTTGTGGAAACGCCGACAAACCCCCTTATGCAGGAGGCGGACATTG 490
..|||||||.||||||||||||||.||.||.||||||||.||.||||||.
BL02660___yjc 417 ACTGTTTGTAGAAACGCCGACAAATCCGCTCATGCAGGAAGCAGACATTC 466
BSNT_01981___ 491 AACATATTGCCCGGATTACAAAGGAGCACGGTCTT-CTGCTGATTGTAGA 539
||.|.|||||.|..||..|.||.|||.|| |.||| |||||.|||||.||
BL02660___yjc 467 AAAAAATTGCGCAAATCGCCAAAGAGAAC-GACTTGCTGCTCATTGTCGA 515
BSNT_01981___ 540 TAATACATTTTATACACCGGTCTTGCAGCGGCCGCTTGAGCTGGGAGCTG 589
.|||||.||||||||||||||..||||..|||||.|||||||.||.||||
BL02660___yjc 516 CAATACGTTTTATACACCGGTTCTGCAAAGGCCGATTGAGCTAGGCGCTG 565
BSNT_01981___ 590 ACATTGTCATTCACAGCGCAACCAAGTATTTAGGCGGGCATAACGATCTG 639
|..||||||||||||||||.||.||||||||.|||||.|||||||||||.
BL02660___yjc 566 ATCTTGTCATTCACAGCGCGACGAAGTATTTGGGCGGTCATAACGATCTT 615
BSNT_01981___ 640 CTTGCTGGACTTGTCGT-------GGTGAAGGATGAGC-GGCTCGGAGAG 681
.|.||.||.|||||||| ||.||| |||| |.|| |||
BL02660___yjc 616 TTGGCGGGGCTTGTCGTCGCAAAAGGCGAA----GAGCTGTCT----GAG 657
BSNT_01981___ 682 GAAATGTTTCAGCATCAAAATGCAATCGGCGCCGTCCTGCCGCCATTTGA 731
||||||||.|||||.||||||||.||||||||.||..|..||||.||.||
BL02660___yjc 658 GAAATGTTCCAGCACCAAAATGCCATCGGCGCGGTTTTATCGCCGTTCGA 707
BSNT_01981___ 732 TTCGTGGCTTCTGATGAGAGGAATGAAGACGCTGAGC-CTCAGAATGCGT 780
|||||||||..|.||||||||..|||||||||| .|| ||.||.|||.|.
BL02660___yjc 708 TTCGTGGCTCTTAATGAGAGGGTTGAAGACGCT-CGCTCTTAGGATGAGA 756
BSNT_01981___ 781 CAGCATCAGGCAAACGCGCAGGAGCTTGCGGCGTTTTTAGAAGAGCAGGA 830
||||||||||.||||||||.||||||.|||||.|||||.|||||||||||
BL02660___yjc 757 CAGCATCAGGAAAACGCGCGGGAGCTCGCGGCCTTTTTGGAAGAGCAGGA 806
BSNT_01981___ 831 AGAAATTTCGGATGTGCTGTATCCCGGAAAAGGCGGCATGCTGTCCTTCC 880
.||||||.|.|||||.||.|||||.||||||||||||||||||||.||||
BL02660___yjc 807 GGAAATTGCCGATGTTCTTTATCCGGGAAAAGGCGGCATGCTGTCATTCC 856
BSNT_01981___ 881 GTCTGCAAAAAGAAGAATGGGTCAATCCGTTTTTAAAAGCACTGAAGACC 930
|..|.|||||||||||||||||||||||||||.|||||...||.|||||.
BL02660___yjc 857 GCGTTCAAAAAGAAGAATGGGTCAATCCGTTTCTAAAAAATCTCAAGACG 906
BSNT_01981___ 931 ATTTGTTTTGCAGAAAGCCTCGGCGGGGTGGAAAGCTTTATTACATACCC 980
||.|||||.||.||||||||||||||.||.||||||||.||.||.|||||
BL02660___yjc 907 ATCTGTTTCGCCGAAAGCCTCGGCGGAGTCGAAAGCTTCATCACCTACCC 956
BSNT_01981___ 981 TGCGACCCAGACGCACATGGATATTCCTGAAGAGATCCGCATCGCAAACG 1030
.|||||.|||||.|||||||||||.||.|||||.|||||.||.|||||||
BL02660___yjc 957 GGCGACACAGACCCACATGGATATCCCGGAAGACATCCGAATTGCAAACG 1006
BSNT_01981___ 1031 GGGTGTGCAATCGGTTGCTGCGCTTTTCTGTCGGTATTGAACA----TGC 1076
|.||.|||||..||.|.|||||||||||.|||||.||.||.|| |.|
BL02660___yjc 1007 GCGTCTGCAACAGGCTTCTGCGCTTTTCAGTCGGAATCGAGCACGTCTCC 1056
BSNT_01981___ 1077 GGAAGATTTAAAAGAGGATCTAAAACAGGCATT----ATGTCAGGTCAAA 1122
|||||.||..|||||||.|||...|||.| | |.||.|||
BL02660___yjc 1057 ----GATTTGAAGCAGGATCTCAAAGCTGCACTGGAAA----AAGTGAAA 1098
BSNT_01981___ 1123 GAGGGA-GCTGTTTCTTTTGAGTAA--- 1146
| |||| ||.|||.|...|||||.|
BL02660___yjc 1099 G-GGGAGGCGGTTCCGCATGAGTCATGA 1125
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