Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05845 and BL02633
See
Amino acid alignment /
Visit
BSNT_05845 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:55
# Commandline: needle
# -asequence dna-align/BSNT_05845___ywcC.1.5803.seq
# -bsequence dna-align/BL02633.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05845___ywcC-BL02633.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05845___ywcC-BL02633.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05845___ywcC
# 2: BL02633
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 810
# Identity: 345/810 (42.6%)
# Similarity: 345/810 (42.6%)
# Gaps: 369/810 (45.6%)
# Score: 646.0
#
#
#=======================================
BSNT_05845___ 1 ATGAAAAAAAACAAATTTCA-AATTAAAAGAGAAGCAACATTTGAAAGTA 49
||||||||.||.|.| || ||| ||..||.|||..|
BL02633 1 ATGAAAAAGAAGACA---CAGAAT-------------ACGGTTCAAAAGA 34
BSNT_05845___ 50 TTATAGACGCTGGCGTGAAT-TTGT-TGATTGACCGAGCGTATG---ATC 94
|..||||.||.|| || |.|| ||.|.|.||.| .||| ||.
BL02633 35 TCGTAGAAGCCGG-----ATATCGTCTGTTCGCCCAA---AATGGATATT 76
BSNT_05845___ 95 CGG---TTTCTGTAGAAGATATCAGCAGAGCCGCCGG-----GTACAGCA 136
||| ..||||||||.||.||.|..|.||..||||| .||.|||.
BL02633 77 CGGCAACCTCTGTAGATGAAATTATGAAAGAAGCCGGTTTTTCTAAAGCT 126
BSNT_05845___ 137 AAGGAGCATTTTATGTTCATTTT--GTCAGCAAGGACGATTTTCTGCTGT 184
| |.||||||.|..||||| |||| ||||| || ||||||
BL02633 127 A-----CGTTTTATTTGTATTTTAAGTCA--AAGGA-GA-----TGCTGT 163
BSNT_05845___ 185 ACCTTCTCGAAAAACGTCAGATGAAAAAAAAGATCATTATAGGGTATCTT 234
||||| ||.||.|..|| |
BL02633 164 ---TTCTC---------CATATTATGAA---------------------T 180
BSNT_05845___ 235 GATCAAATGGAGCGGGAGTCAGTGAAATCGCTGACATTGGACGAGGCTG- 283
||.||.||||| |.||||||..|| |||.||..||
BL02633 181 GAGCAGATGGA-------------AGATCGCTTTCA---GACCAGCATGA 214
BSNT_05845___ 284 -----------CAAAACACGCTGCA--------------------GAACT 302
.||||.|||||| | ||||
BL02633 215 ATTGTTTTCGAAAAAAGACGCTG-AGGGGATTGCTCGCGGGGATTGAAC- 262
BSNT_05845___ 303 GCTTTATTCCTATTACAT-AAATA---AGCCGTCGTGGGACATCACCTCG 348
.|||.|||| ..|||| ||||| |||..|| ||||.|
BL02633 263 ACTTGATTC---AAACATCAAATAAAGAGCATTC----GACAGC------ 299
BSNT_05845___ 349 TTTGCCAT-----GAA--CATGCC-----GACATATAAAGTC-------T 379
||| || ||| .|||.| |.||||.|.| || |
BL02633 300 TTT---ATTTTTGGAATTTATGGCAAATAGTCATAGATA-TCCTGAGATT 345
BSNT_05845___ 380 TAAAGAAATGCAAGGCCTATGTCCGGCTGTACGAATTGTGGGTGGAAGAA 429
.|||||||.|.| |.||..|||||.||...||||..|||
BL02633 346 CAAAGAAAGGTA--------GCCCTTCTGTATGAGCAGTGGAGGGA---- 383
BSNT_05845___ 430 AATGTGTTATAT-------ATTAAGTGGCTGAAGGAGAGA---------- 462
||.||.|.| |||.||..||||.|||| |||
BL02633 384 ---GTTTTTTGTCGAAATGATTGAGCAGCTGCAGGA-AGAAGGCATTGTT 429
BSNT_05845___ 463 ------------------AAGCTGATTG-----ACGCCTGTATTG--ATC 487
|||.||||.| ||| ||| |||| |||
BL02633 430 CAGAAACAGCTCCATCCGAAGGTGATGGCGTCTACG-CTG-ATTGCCATC 477
BSNT_05845___ 488 CTGAATATACGGCTAAAATAAT--ATGTGCAGTCCTCGACGGA------- 528
.|.| |||||||.||..|| | || ||.|| ||||
BL02633 478 TTTA----ACGGCTACAACCATCAA----CA--CCACG-CGGATCCGTCG 516
BSNT_05845___ 529 ATCATTAAACAATCATATGTATTGGGCCAGC--CAG-CCA---------- 565
||.|.|||||| ||..|||| ||| |||
BL02633 517 ATTAATAAACA------------GGAACAGCTTCAGTCCATTATTTTCTT 554
BSNT_05845___ 566 CCT---TCCGCAGCTTTTTAGACGCACTCTCGGTATTTTTTACTTTAGAC 612
.|| ||||.|||| ||| .||||||
BL02633 555 GCTGAATCCGAAGCT--------GCA---------------TCTTTAG-- 579
BSNT_05845___ 613 AGAGAGCACGAGACGCCAAGAATTTTGAAAAGTTTTTCAGAAAGCGAGGA 662
BL02633 579 -------------------------------------------------- 579
BSNT_05845___ 663 ACATCAGTGA 672
BL02633 579 ---------- 579
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.