Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04636 and BL02599
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04636___kapD.1.5803.seq
# -bsequence dna-align/BL02599___kapD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04636___kapD-BL02599___kapD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04636___kapD-BL02599___kapD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04636___kapD
# 2: BL02599___kapD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity: 467/633 (73.8%)
# Similarity: 467/633 (73.8%)
# Gaps: 30/633 ( 4.7%)
# Score: 1672.0
#
#
#=======================================
BSNT_04636___ 1 GT--GACGACAAACAGCTTACTCATTATTGATTTCGAATTTACAATGCCC 48
| ||.| |.|.||.||||||.|||||||||||.||||||||||||||.
BL02599___kap 1 -TTGGAAG-CGAGCACCTTACTGATTATTGATTTTGAATTTACAATGCCT 48
BSNT_04636___ 49 GATGGAAAGTA-CAGCCCTCAAAACTTCTTCCCGGAAATCATTGAAGCCG 97
||.|||||||| || |||.|||||.||.||||||||||||||.|||||.|
BL02599___kap 49 GAGGGAAAGTATCA-CCCGCAAAATTTTTTCCCGGAAATCATAGAAGCAG 97
BSNT_04636___ 98 GAATTGTAAAGTCGATTGATGATGAAGTGGTTGAGACGTTTTCTAGCTAT 147
|.|||||||||.||.||.|||||||.|||||||||||||||||.||||||
BL02599___kap 98 GGATTGTAAAGACGGTTCATGATGAGGTGGTTGAGACGTTTTCAAGCTAT 147
BSNT_04636___ 148 GTTAGACCGAAAAAGTTCCCGAAGCTTACGAAACGCTGCAAATCATTTT- 196
.|||..|||||.||||||||.||..|.||||..||||||||| .|||||
BL02599___kap 148 ATTAAGCCGAAGAAGTTCCCTAAATTAACGAGGCGCTGCAAA-AATTTTC 196
BSNT_04636___ 197 TAAAAATAACCCAAAAACAGGTAGACGAAGGAATGAGATT-----CGAGG 241
|.|..||.||.||..|||||||.|||.||||.||.|..|| ||..|
BL02599___kap 197 TCAGCATCACGCAGGAACAGGTTGACCAAGGCATCACGTTTAACGCGCTG 246
BSNT_04636___ 242 ATTTCATCCGTAAA-CTAAACGAGCTGGATCCTGAGAAAAACAGCACAAT 290
||| |.||| ||....|||||.||||||||...|||||||...||
BL02599___kap 247 ATT------GAAAAGCTGCGGGAGCTTGATCCTGACCGAAACAGCGTCAT 290
BSNT_04636___ 291 TATTACGTGGGGAAACATGGATATGAAAGTGCTGAAGCAAAACTGTATGT 340
.|||||.|||||||||||||||||||||||||||||||||||.||.||||
BL02599___kap 291 CATTACATGGGGAAACATGGATATGAAAGTGCTGAAGCAAAATTGCATGT 340
BSNT_04636___ 341 TTAACCATATCCCTTTCCCGTTTAAGGGAGAAATGAGAGATTTATCGCTT 390
|.||||||.|.||.||.||||||||.|||||.|||||.||..|.||..|.
BL02599___kap 341 TCAACCATGTTCCGTTTCCGTTTAAAGGAGAGATGAGGGACCTTTCCATG 390
BSNT_04636___ 391 GAATACAAAAACTTTTTTGGAGACCGGACATTGACGGGTTTATGGAAAGC 440
||.|||||..|.|||||.||.|||...|||||||||..|||.|||||.||
BL02599___kap 391 GAGTACAAGGAATTTTTCGGCGACAAAACATTGACGAATTTGTGGAAGGC 440
BSNT_04636___ 441 TGCCGAAGAGTATGGAGATTCCGGAACCGGCACCCATCATAAAGCGCTTG 490
.||.||||||||.||.|||||.|||||.||.|..||.|||||||||||||
BL02599___kap 441 AGCGGAAGAGTACGGCGATTCAGGAACGGGAAAACAGCATAAAGCGCTTG 490
BSNT_04636___ 491 ATGATGCTCTCACAGCATATAAACTTTTTAAGCTTGTTGAGCAGGATAAG 540
|.||.||..|.|||.|.|||||..|.|||..|||.||.||.|.|||||||
BL02599___kap 491 ACGACGCGATGACAACGTATAAGTTGTTTCGGCTCGTAGAACGGGATAAG 540
BSNT_04636___ 541 CAGTATCTCGAAAAGCCAAAACCGCCCACAATCGGCGAAAGAATCGATTT 590
.|||||.|.|||||.||.||.|||.|.||.||||||||| ||..||
BL02599___kap 541 AAGTATTTGGAAAATCCGAAGCCGACGACGATCGGCGAA-----CGGGTT 585
BSNT_04636___ 591 AACC-----GAACTGTTCAAGCGCGCGACGTGA 618
.||| .||.|.||...||.|||.||.|.|
BL02599___kap 586 GACCTCTCAAAAGTCTTTCCGCACGCCACATAA 618
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