Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00959 and BL02590
See
Amino acid alignment /
Visit
BSNT_00959 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_00959.1.5803.seq
# -bsequence dna-align/BL02590___ydfR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00959-BL02590___ydfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00959-BL02590___ydfR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00959
# 2: BL02590___ydfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity: 217/625 (34.7%)
# Similarity: 217/625 (34.7%)
# Gaps: 347/625 (55.5%)
# Score: 473.5
#
#
#=======================================
BSNT_00959 0 -------------------------------------------------- 0
BL02590___ydf 1 ATGGCATTTGTATTGGAAACATTGTTTCTCATCTTAACGGGCATTGTTCT 50
BSNT_00959 0 -------------------------------------------------- 0
BL02590___ydf 51 GCTGAGAATTTCGGGAAGAAAATCAATTTCGCAGATGACAATTGCCACCA 100
BSNT_00959 0 -------------------------------------------------- 0
BL02590___ydf 101 CCGTCGTCATGATATCCATCGGAACGATCATCGTTCAGCCGATTATAGAA 150
BSNT_00959 0 -------------------------------------------------- 0
BL02590___ydf 151 GACAGCATTTTTAAAACGGTGGCAGCTGCATCGATCTTTATCATCGTCCT 200
BSNT_00959 1 -ATGTTGACCG-------GAGAA-GCAAAAGTTG---TTATTGAAAAC-- 36
.||||||.|| ||.|| | |||.||| ||.||||||.|
BL02590___ydf 201 TCTGTTGATCGAGTACTTGAAAATG--AAATTTGATTTTTTTGAAAGCCT 248
BSNT_00959 37 --------GGACAGC---TTCAT--ATCGAAAAC---------------- 57
|||.||| |..|| |||||||||
BL02590___ydf 249 GATTGCGGGGAAAGCCGTTGTATTGATCGAAAACGGGGAGCTCCAGGAGC 298
BSNT_00959 58 -----TTAAAGAAGATGAGACTTACAGTTGATCAGCTTGAAATGCAGCTA 102
|||||.|||....|.||.||.||.||.|||||.||||||..|||.
BL02590___ydf 299 AGAATTTAAAAAAGCACCGCCTGACCGTCGACCAGCTGGAAATGAGGCTC 348
BSNT_00959 103 CGGCTTCACGGCGTTACGGGTATACAA--------GATGTCAAAATTGCG 144
||| .||| |.|||..|.||| |||||.||||..|..
BL02590___ydf 349 CGG--ACAC------AGGGGATTTCAAAGTTAGCGGATGTGAAAAACGTA 390
BSNT_00959 145 ACATTAGAGGCAAACGGGCA-AT----TAGGAATTGAATTGACTGATGAC 189
||..|.||..|||||||.|| || ||.||.|| || |.|||||.
BL02590___ydf 391 ACGCTCGAATCAAACGGCCAGATCGGCTACGAGTT--AT---CGGATGAT 435
BSNT_00959 190 GCCAAGCCTTTAACAGTCAGGGATCTGA----AAAAACTCATTCACCCCG 235
||||||||||| ||.|..|||| || ||||| |||| |..||
BL02590___ydf 436 GCCAAGCCTTT--CACTATGGGA---GAGTATAAAAA---ATTC-CTGCG 476
BSNT_00959 236 ATTTCATAAATAA------------GGACGGACAAGCCCAGTCTGGCAAT 273
..|.|| |||.|| ||| |||||| ||.||.| ||
BL02590___ydf 477 CATGCA-AAACAACCTGCAGCAGCCGGA-GGACAA--CCTGTTT---AA- 518
BSNT_00959 274 CAGAATATTTTTGAT----GAAG-----TTGGCAAAAAAAATAAAAAAAA 314
|||| || |||| .|| ||
BL02590___ydf 519 -AGAA--------ATCACCGAAGGCCATCTG-----------------AA 542
BSNT_00959 315 CGTCCCTAAAAAGC---TGCATTAA 336
||..|||.|.|||| |||..|||
BL02590___ydf 543 CGAACCTGATAAGCAATTGCGCTAA 567
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.