Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04616 and BL02589
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04616___yugN.1.5803.seq
# -bsequence dna-align/BL02589___yugN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04616___yugN-BL02589___yugN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04616___yugN-BL02589___yugN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04616___yugN
# 2: BL02589___yugN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 428
# Identity: 274/428 (64.0%)
# Similarity: 274/428 (64.0%)
# Gaps: 46/428 (10.7%)
# Score: 727.5
#
#
#=======================================
BSNT_04616___ 1 ATGATACCAATACCTTCCGCGATAGATGG----GCAGTC-TTTTCTGCTT 45
||||||....|||||||.| |..||| .|.||| |||||| |||
BL02589___yug 1 ATGATAAGCTTACCTTCTG----AACTGGAAAACCGGTCGTTTTCT-CTT 45
BSNT_04616___ 46 CAAGAACTGGAACAAGTGATGAAGCCGCTCGGTTATGTGATAAACGGCGG 95
.|..|.||.|||||...|.|||||||.|||||.||||||||.|.||||||
BL02589___yug 46 TATCACCTCGAACAGACGCTGAAGCCTCTCGGCTATGTGATCAGCGGCGG 95
BSNT_04616___ 96 CTGGGAATACGATCATGGCTACTTTGATTATAAAATTGATGATAGA-GAC 144
|||||||||.||.|..||||..|||||.|||||.||||||||| || |||
BL02589___yug 96 CTGGGAATATGACCGCGGCTTTTTTGACTATAAGATTGATGAT-GAGGAC 144
BSNT_04616___ 145 GGCTATTTATTTTTAAGAATTCCCGTCAATGCG--GTACAGGGCAGTCTC 192
||.||..|.|||||..|.|||||..|..|.||| |.|| ||.||| ||.
BL02589___yug 145 GGATACCTGTTTTTGCGGATTCCGTTTGAGGCGGAGGAC-GGACAG-CTT 192
BSNT_04616___ 193 GATGAACGAGGGGCGGCCGTCCGGATCGGAACGCCATTTATGCTGAGACA 242
|||...|.|...|||.|.|||..|.||||.|||||.|||.||||..|.||
BL02589___yug 193 GATTCGCAAAATGCGACGGTCAAGCTCGGCACGCCGTTTTTGCTTCGCCA 242
BSNT_04616___ 243 GGTGTTTCAGGCGGATGTTGACGATCACGCCG---AGGGAGGGCCTTTCC 289
.||.|.|||||..|...|.||.||..|||.|| || |||..|||||
BL02589___yug 243 TGTCTATCAGGAAGCGCTGGATGACTACGTCGTTCAG---GGGAATTTCC 289
BSNT_04616___ 290 AATCA-CTGTTTAATCAATTTTCCGAACCG---GAAAGGCGGGACGCGGA 335
...|| || |||.|.||.|||.|||||||| |||| ..|||||.||
BL02589___yug 290 GCGCATCT-TTTGACCAGTTTGCCGAACCGAAAGAAA---AAGACGCCGA 335
BSNT_04616___ 336 AATTGATCCGGCATTTTTGGATATCGGCGCCTCTC---TCGTGAAAGAAT 382
.||| .|||||.|.|.||.|.|.|...|||..|| | ||.||||||.
BL02589___yug 336 TATT--CCCGGCGTCTATGAAAAGCTTGGCCAATCGTAT-GTAAAAGAAC 382
BSNT_04616___ 383 TGGAGGATG---TTC--TGTTACACTAG 405
|.||.||.| ||| |.|||.
BL02589___yug 383 TCGAAGAGGCGCTTCTTTCTTAA----- 405
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