Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04608 and BL02587
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04608___yugS.1.5803.seq
# -bsequence dna-align/BL02587___yugS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04608___yugS-BL02587___yugS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04608___yugS-BL02587___yugS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04608___yugS
# 2: BL02587___yugS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1331
# Identity: 960/1331 (72.1%)
# Similarity: 960/1331 (72.1%)
# Gaps: 82/1331 ( 6.2%)
# Score: 3375.0
#
#
#=======================================
BSNT_04608___ 1 TTGCTTATTTTACAAT----TGATCGCCATTTTTGTTTTGATTG--GCAT 44
|||..|||..| .||| |..|||.|| |..||||.|||| ||
BL02587___yug 1 TTGAATATCCT-GAATCTCATACTCGTCA---TACTTTTAATTGCAGC-- 44
BSNT_04608___ 45 TACGGCTGTTTTCGTTGCAGCGGAATTTGCGATCGTCAAAATTAGAGGTT 94
|||||||.|||||||||..||.||||||||||||||||||||..|.||..
BL02587___yug 45 TACGGCTTTTTTCGTTGTCGCCGAATTTGCGATCGTCAAAATCCGCGGCA 94
BSNT_04608___ 95 CAAAAATCAATCAGCTCATCGAAAGCGGTGACAGCCGAGCACTAGCCGCA 144
||||||||.||||||||.|.||||||||.||.|..||.||..|.||.||
BL02587___yug 95 CAAAAATCGATCAGCTCGTTGAAAGCGGGGATAAGCGGGCGATTGCGGC- 143
BSNT_04608___ 145 CATAA-AATCATCTCCAATCTTGACGAGTATTTATCAGCCTGCCAGCTCG 193
||.|| |.|..|..|.||||||||.||.|||||.||.|||||||||||||
BL02587___yug 144 CAAAAGAGTGGTGACAAATCTTGATGAATATTTGTCTGCCTGCCAGCTCG 193
BSNT_04608___ 194 GGATTACGATTACAGCCCTCGGCCTTGGGTGGCTTGGTGAACCTACATTT 243
|.|||||.||.||.||..|.||.||.||.|||||.||.|||.|.|||||.
BL02587___yug 194 GCATTACCATCACCGCATTAGGGCTCGGCTGGCTCGGAGAATCGACATTC 243
BSNT_04608___ 244 GAACGTTTTCTTCATCCC----------TTATTTACAATGACAGGCATGC 283
||||...|..|||| ||| |||||| |||.|||
BL02587___yug 244 GAACAGATCATTCA-CCCGCTTTTTGAGTTATTT---------GGCCTGC 283
BSNT_04608___ 284 CGGA-ACCGTTTAACCACATTGTCACATTT--GTAGTT---GCATTTATC 327
|.|| .||||||.| |.|.||.| || ||.||| |||||||||
BL02587___yug 284 CTGAGTCCGTTTTA--AGAGTGGC----TTCGGTTGTTGCCGCATTTATC 327
BSNT_04608___ 328 ATCGTCACTTTTTTGCATGTGGTGATGGGGGAGCTTGCCCCGAAAACGGT 377
|||.|.||.||||||||.||.|||.|.||.||||||||.||.|||||..|
BL02587___yug 328 ATCATTACATTTTTGCACGTTGTGGTCGGCGAGCTTGCGCCAAAAACAAT 377
BSNT_04608___ 378 TTCTATTCAAAAAGCTGAAGCTGTAAGCTTATGGATTGCAAAGCCGCTGA 427
|.|.|||||||||||.|||||.||.||||||||||..||.||||||||.|
BL02587___yug 378 TGCGATTCAAAAAGCGGAAGCCGTCAGCTTATGGACGGCGAAGCCGCTCA 427
BSNT_04608___ 428 TCTGGTTTTATAAAATCACGTACCCGTTTATTAAAGCATTAAACGGCTCT 477
|.|.||||||||||||||.||..||||||||.|||...||.||.|||||.
BL02587___yug 428 TTTTGTTTTATAAAATCATGTTTCCGTTTATCAAACTGTTGAATGGCTCG 477
BSNT_04608___ 478 GCAAGTTTTCTTGT----GAAATTGTTTGGCTTTCATTCAGTAAAGGAGC 523
||..| ..||| |||..||||.||.||.|||||.||.||.||||
BL02587___yug 478 GCCCG----GCTGTTAACGAAGCTGTTCGGGTTCCATTCTGTTAAAGAGC 523
BSNT_04608___ 524 ATCAGGTTGTCATCAGCGAGGAGGAACTAAGACTGATCCTTTCAGAAAGC 573
||.|.||.|..|||||.|||||.||.||..|.||.||.||.||.||||||
BL02587___yug 524 ATGAAGTGGCGATCAGTGAGGAAGAGCTGCGGCTTATGCTGTCTGAAAGC 573
BSNT_04608___ 574 TATGAAAAGGGAGAAATCAATCAGTCTGAATTCCGT-----TATGTAAAT 618
|||.||||.||.||||||||||||||||| || ||.||.||.
BL02587___yug 574 TATAAAAAAGGGGAAATCAATCAGTCTGA-----GTATAAATACGTCAAC 618
BSNT_04608___ 619 AAGATTTTTGAATTTGACAACCGGGTAGCGAGAGAGATTATGATTCCGCG 668
||.||||||||||||||||||.||.|.||..|.||.||.|||.|.|||.|
BL02587___yug 619 AAAATTTTTGAATTTGACAACAGGCTGGCCCGGGAAATCATGGTGCCGAG 668
BSNT_04608___ 669 GACAGAAATTG---CGGTTATCTCTCTGGAGCAGTCGCTTGAAGAGGCAA 715
.||.||.||.| ||.||||..| .||.||.||..|..||||.||.|
BL02587___yug 669 AACGGAGATGGCGACGCTTATGGC---CGATCAATCCATAAAAGAAGCGA 715
BSNT_04608___ 716 TTCATCACATCATTAATGAACGGTATACACGCTACCCTGTCATCAAAGAT 765
||.|...|.|||||||||||||.||.||..|.||.||.||.||.||.||.
BL02587___yug 716 TTGAAACCGTCATTAATGAACGCTACACGAGATATCCGGTTATTAAGGAC 765
BSNT_04608___ 766 GACAAGGATCATATTTTAGGGATCATCAACAGCAAAGATATGTTTAAAGC 815
||.||.||.||||||.|.||.||..||||||||||.||..||||||||.|
BL02587___yug 766 GATAAAGACCATATTATCGGAATTGTCAACAGCAAGGACTTGTTTAAATC 815
BSNT_04608___ 816 TTATTTTCTCGGCCAGCCGA------TAAAGCTGGAGCAAATCATGAGGC 859
.||||||||||.|.||.||| ||| ||| |..|.|||||||
BL02587___yug 816 GTATTTTCTCGACGAGACGATTCCTTTAA--CTG----ACTTAATGAGGC 859
BSNT_04608___ 860 CCGTTATCAGGGTCATTGAAAGCATTCCTGTTCAACAGCTTTTAATCCGC 909
|.||.||||||||.|||||.|.|||.||..|.||..||||.||.||.|||
BL02587___yug 860 CTGTCATCAGGGTGATTGAGAACATACCGATCCAGGAGCTCTTGATTCGC 909
BSNT_04608___ 910 ATGCAGAAGGAACGGATTCACATGGCGATTCTCGTAGATGAATACGGGGG 959
|||||||||||||||||.||.|||||.|||||.||.|||||.|||||.||
BL02587___yug 910 ATGCAGAAGGAACGGATCCATATGGCCATTCTTGTTGATGAGTACGGCGG 959
BSNT_04608___ 960 AACGGCGGGGCTTGTCACTGTAGAGGATATTATAGAGGAAATCGTCGGGG 1009
||||||.|||||.||.||.|||||.||.||..||||||||||||||||.|
BL02587___yug 960 AACGGCAGGGCTGGTTACGGTAGAAGACATATTAGAGGAAATCGTCGGAG 1009
BSNT_04608___ 1010 AAATCCGCGATGAGTATGATCAAGATGAAACACCGCACATCCTGAAAAAG 1059
|||||.|.|||||||.||||||.||.||||..||||||||..|.|||||.
BL02587___yug 1010 AAATCAGGGATGAGTTTGATCAGGACGAAATGCCGCACATTATAAAAAAA 1059
BSNT_04608___ 1060 GGCGAGCACCATTATGTGATGGATGGAAAAGCGCTAATAGACGAAGTGAA 1109
|||||.||.||||||.|.|||||.||||||||..||||.|||||||||||
BL02587___yug 1060 GGCGAACATCATTATATTATGGACGGAAAAGCTTTAATCGACGAAGTGAA 1109
BSNT_04608___ 1110 TGACCTTCTCGACATTGCGATTGAAAATGAAGAAATTGATACGATTGCAG 1159
||||||.||..|.||.|||||.|||||.||||||.|.||||||||.||.|
BL02587___yug 1110 TGACCTCCTTCATATCGCGATAGAAAACGAAGAAGTCGATACGATCGCCG 1159
BSNT_04608___ 1160 GCTGGCTTCTAACGCAAAAAATGGAACTGAAAGCAGGAGATGTGATACAA 1209
||||||||.|.||||||||.|||||.||||||...||.||..|..|..||
BL02587___yug 1160 GCTGGCTTTTGACGCAAAAGATGGAGCTGAAAAACGGGGACATCCTTAAA 1209
BSNT_04608___ 1210 GCGGAGGGCTGTGAATTTAAAATCCTCGACGCCGAAGATCATCACATCCG 1259
.|.|||||.||.|||||||||||.||.||.||.|||||||||||.|||||
BL02587___yug 1210 ACTGAGGGGTGCGAATTTAAAATTCTTGATGCTGAAGATCATCATATCCG 1259
BSNT_04608___ 1260 TTTTGTAGAAATTAAAAAAACTGATTTTTAA 1290
|||..|.|||.|.||||||||.|||||||||
BL02587___yug 1260 TTTCATCGAAGTGAAAAAAACGGATTTTTAA 1290
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