Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04604 and BL02584
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:45
# Commandline: needle
# -asequence dna-align/BSNT_04604___yugU.1.5803.seq
# -bsequence dna-align/BL02584___yugU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04604___yugU-BL02584___yugU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04604___yugU-BL02584___yugU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04604___yugU
# 2: BL02584___yugU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 414
# Identity: 306/414 (73.9%)
# Similarity: 306/414 (73.9%)
# Gaps: 27/414 ( 6.5%)
# Score: 1097.5
#
#
#=======================================
BSNT_04604___ 1 ATGCTGAAAACACTGCAAATCAAAACAACCAAACGAGATGAAATGATTGA 50
|||.||||||.|.|.||.||..||||||.|...||.|||||||||.||||
BL02584___yug 1 ATGTTGAAAAAAATACAGATTCAAACAAACCGGCGCGATGAAATGCTTGA 50
BSNT_04604___ 51 TATCACCCGGGAGGTGGAAGCATT--TCTTCAAGAAAC-AGGTATAACGA 97
||||||....||.||..||..||| || |||..|||| |.||.| |.|
BL02584___yug 51 TATCACAAATGACGTCCAAAGATTCATC-TCAGAAAACGATGTTT--CCA 97
BSNT_04604___ 98 GCGGCGC----AGCGCTGATTTACTGTCCGCATACGACTGCGGGCATTAC 143
||||||| |.|| |.|||||||||||||||||.|||||.||.||
BL02584___yug 98 GCGGCGCTGTTATCG----TCTACTGTCCGCATACGACGGCGGGTATAAC 143
BSNT_04604___ 144 AATTAATGAAAATGCCGATCCGGACGTCAAAAAAGATATGCTCAGAAGGT 193
.||.||||||||||||||.||.||.||||||...||||||||.|||||.|
BL02584___yug 144 GATCAATGAAAATGCCGACCCCGATGTCAAACGCGATATGCTGAGAAGAT 193
BSNT_04604___ 194 TTGATGAGGTATATCCGTGGGAACATGAGCTGGACCGCCATATGGAGGGC 243
|.|||||.||.||||||||||||||||||||.||||||||||||||.||.
BL02584___yug 194 TCGATGAAGTGTATCCGTGGGAACATGAGCTTGACCGCCATATGGAAGGG 243
BSNT_04604___ 244 AATACAGCTGCACACATGAAGTCGAGTACGGTCGGAGCTTCACAGCATGT 293
||||||||.||.||..||||..||||.||||||||.||.||.||||||.|
BL02584___yug 244 AATACAGCGGCGCATTTGAAAGCGAGCACGGTCGGGGCATCGCAGCATAT 293
BSNT_04604___ 294 CATTGTGGAAAACGGCCGGCTCATTCTTGGAACGTGGCAGGGCATTTATT 343
.|||.|.|||...|||.||||..|.||.||.||.|||||||||||.||||
BL02584___yug 294 GATTATTGAAGGGGGCAGGCTTGTCCTCGGGACTTGGCAGGGCATATATT 343
BSNT_04604___ 344 TCTGTGAATTTGACGGCCC-TCGCACCCGGACATGCTATATCAAAAT--- 389
||||.||.||.|||||||| ..||| ||||||.||||||.|.|||||
BL02584___yug 344 TCTGCGAGTTCGACGGCCCGAGGCA-CCGGACGTGCTATTTTAAAATTTT 392
BSNT_04604___ 390 ----GATGGGATAA 399
||| |||
BL02584___yug 393 AGCCGAT----TAA 402
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