Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04581 and BL02576

See Amino acid alignment / Visit BSNT_04581 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04581___uppP.1.5803.seq
#    -bsequence dna-align/BL02576___yubB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04581___uppP-BL02576___yubB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04581___uppP-BL02576___yubB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04581___uppP
# 2: BL02576___yubB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     599/862 (69.5%)
# Similarity:   599/862 (69.5%)
# Gaps:          62/862 ( 7.2%)
# Score: 1970.0
# 
#
#=======================================

BSNT_04581___      1 ATGACTCTATGGGA-ATTGTTTGTAGCCGCCATTTTAGGAATCGTAGAAG     49
                     ||||...|.||||| ||| .||||.||...|||..|.|||||.||.||||
BL02576___yub      1 ATGAACATTTGGGATATT-ATTGTCGCTATCATACTTGGAATTGTTGAAG     49

BSNT_04581___     50 GATTAACAGAGTACGCGCCGGTTTCTTCGACAGGACATATGATTATAGTA     99
                     |||||||.||.||.||.||.||.||.||.|||||.|||||||||||.||.
BL02576___yub     50 GATTAACCGAATATGCCCCTGTATCGTCAACAGGGCATATGATTATTGTT     99

BSNT_04581___    100 GACGACATCTGGCTTAAATC--AAGTAAT-CTGATGTCAGAAGAAGCTGC    146
                     |||||..|||||||.|||||  |||.|.| ||.|.|.|   .||.||.||
BL02576___yub    100 GACGATGTCTGGCTGAAATCGAAAGAACTGCTTACGCC---GGAGGCGGC    146

BSNT_04581___    147 TAACTCATTCAAGGTGGTTATTCAGCTAGGCTCCATTTTAGCAGTAGCTA    196
                     .||..|.||.||.||.||.||||||||.||||||||..|.||.||.||..
BL02576___yub    147 GAATACCTTTAAAGTCGTGATTCAGCTCGGCTCCATCCTTGCCGTCGCCT    196

BSNT_04581___    197 TCGTGTTTAAAGACCGAATTTTAAATTTACTGGGCTTGAAAAAAAATATT    246
                     ||||.|||||||||||.|||.|.|||.|..|.|||.||||.|||||.|||
BL02576___yub    197 TCGTATTTAAAGACCGGATTCTCAATCTTTTAGGCATGAAGAAAAACATT    246

BSNT_04581___    247 AC--AAGCGACCAGGAGCAGGGACAT----AAA------TTAAGCATTGC    284
                     ||  ||        |||||  ||.||    |||      ||  .|||.||
BL02576___yub    247 ACGGAA--------GAGCA--GAAATCGGGAAACCGCCTTT--CCATCGC    284

BSNT_04581___    285 CCAAATTGCCGTCGGACTCGTGCCTGCAGCTGTTCTCGGCTTTTTGTTTG    334
                     ||||||.||.||.||.||.||.||.||.|||||.||.||.|||||.||||
BL02576___yub    285 CCAAATCGCTGTAGGCCTTGTTCCCGCCGCTGTGCTTGGATTTTTATTTG    334

BSNT_04581___    335 AAGATTACATTGATGAATATTTATTTTCCGTTAAAACTGTGGCCATCGGT    384
                     ||||.||.||||||.||||.||.||||||||....||.||.||..|||||
BL02576___yub    335 AAGACTATATTGATCAATACTTGTTTTCCGTCCGCACCGTTGCGGTCGGT    384

BSNT_04581___    385 TTAATTGCCGGGGCAATCCTCATGCTTTTTGCTGACTGGGTCAAT-----    429
                     .|.||.|||||.||..|.||.|||||....||.||||||.|||||     
BL02576___yub    385 CTCATCGCCGGTGCGGTGCTGATGCTCGCAGCCGACTGGATCAATCGGCG    434

BSNT_04581___    430 -AAACGGAAAACAGCGACAGACACACTCGACCGCATTTCCTATAAACAGG    478
                      ||  |||.|    |||||||..|..|.||..|.||..|.|||||.||||
BL02576___yub    435 CAA--GGATA----CGACAGATTCGGTTGATAGGATGACGTATAAGCAGG    478

BSNT_04581___    479 CGATAGCCGTCGGCTTATTCCAATGTCTTGCCCTTTGGCCGGGTTTCTCG    528
                     ||.|.|.|.|.||..|.||.||||||||.||.|||||||||||.||||||
BL02576___yub    479 CGCTTGGCATGGGGCTGTTTCAATGTCTGGCGCTTTGGCCGGGCTTCTCG    528

BSNT_04581___    529 CGTTCTGGTTCAACCATATCCGGAGGTGTTATTCTCGGATTAAACCACCG    578
                     ||.||.|||||.||.||.||.||.||.|||||||||||.||.|.||||.|
BL02576___yub    529 CGCTCGGGTTCGACGATTTCAGGCGGGGTTATTCTCGGCTTGAGCCACAG    578

BSNT_04581___    579 AGCTGCAGCCGACTTTACGTTTATTATGGCGATGCCGATCATGATGGGAG    628
                     |||.||.||.||.||.||.||.||.||||||||.||||||||||||||.|
BL02576___yub    579 AGCGGCCGCTGATTTCACCTTCATCATGGCGATTCCGATCATGATGGGTG    628

BSNT_04581___    629 CCAGCTTTCTAAGCCTCGTGAAGCA-----TTGGGACAGCTTAAGCTCGG    673
                     |.|||.|.||    |||.|.||.||     |.||.|.| .||.||..|.|
BL02576___yub    629 CAAGCCTGCT----CTCTTTAATCAAAAACTGGGCATA-TTTGAGTGCAG    673

BSNT_04581___    674 ATCTGATGCCATTTTTCATCGTCGGCTTTATCTGTGCCTTTGTTGTCGCA    723
                     |.|||.||||.||.||.||||..||.||||||.|.||.|||.|||||||.
BL02576___yub    674 ACCTGTTGCCTTTCTTTATCGCAGGGTTTATCAGCGCTTTTATTGTCGCT    723

BSNT_04581___    724 CTGTTTGTCGTCCGTTTCTTCTTAAGGCTGATTAACAAAATCAAACTTGT    773
                     ||.||||||||||||||.|||.|..|||||||.|||||.|||||.||.||
BL02576___yub    724 CTTTTTGTCGTCCGTTTTTTCCTCCGGCTGATCAACAAGATCAAGCTGGT    773

BSNT_04581___    774 CCCATTTGCAATCTATCGAATTATTCTCGGTGTGATT---TTACTTTTG-    819
                     .||.|||||.|||||||||||..||.|.||..||.||   ||..||||| 
BL02576___yub    774 TCCGTTTGCCATCTATCGAATCGTTTTAGGGCTGCTTCTGTTCATTTTGT    823

BSNT_04581___    820 ATCATGATGTAA    831
                     .||    |||||
BL02576___yub    824 TTC----TGTAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04581 and BL02576

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
