Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02911 and BL02566

See Amino acid alignment / Visit BSNT_02911 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:37
# Commandline: needle
#    -asequence dna-align/BSNT_02911___yncD.1.5803.seq
#    -bsequence dna-align/BL02566___alr2.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02911___yncD-BL02566___alr2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02911___yncD-BL02566___alr2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02911___yncD
# 2: BL02566___alr2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity:     974/1190 (81.8%)
# Similarity:   974/1190 (81.8%)
# Gaps:          10/1190 ( 0.8%)
# Score: 3995.0
# 
#
#=======================================

BSNT_02911___      1 TTGATGATAAAGCTTTGCCGAGAAGTTTGGATCGAAGTCAATCTTGATGC     50
                        ||||.||||||||||||.|||||||||.|.||.||.|||||||||||
BL02566___alr      1 ---ATGAAAAAGCTTTGCCGTGAAGTTTGGGTAGAGGTAAATCTTGATGC     47

BSNT_02911___     51 CGTTAAAAAGAATTTGCGAGCGATCCGCCGTCATATTCCACATAAGAGCA    100
                     ..|.|||||.||||||||.|||.|.||.||.||||||||..|.|||||||
BL02566___alr     48 GATCAAAAAAAATTTGCGCGCGTTTCGGCGGCATATTCCGAAAAAGAGCA     97

BSNT_02911___    101 AAATTATGGCTGTCGTAAAAGCGAACGGTTATGGTCACGGGTCTATAGAA    150
                     |||||||||||||||||||||||||.|.||||||||||||.||..|.|||
BL02566___alr     98 AAATTATGGCTGTCGTAAAAGCGAATGCTTATGGTCACGGATCGGTGGAA    147

BSNT_02911___    151 GTGGCACGCCATGCACTGGAACACGGGGCGAGTGAGCTTGCTGTTGCCAG    200
                     ||.||||||||||||||.|||||.||.|||||||||||.||.||||||..
BL02566___alr    148 GTTGCACGCCATGCACTTGAACATGGTGCGAGTGAGCTCGCCGTTGCCTC    197

BSNT_02911___    201 TGTGGAGGAAGGAATCGTTTTACGTAAAGCTGGGATTACAGCACCTATCC    250
                     .||||||||||...||||||||||.|||||.|||||||.|||.||.||||
BL02566___alr    198 GGTGGAGGAAGCGGTCGTTTTACGAAAAGCGGGGATTAAAGCGCCGATCC    247

BSNT_02911___    251 TTGTGCTTGGTTTTACATCCCTTAGTTGTGT-AAAGAAGTCAGCAGCTTG    299
                     |||||||||||||.||..|.||.||.||||| ||||||| |.||||||||
BL02566___alr    248 TTGTGCTTGGTTTCACCCCGCTGAGCTGTGTGAAAGAAG-CGGCAGCTTG    296

BSNT_02911___    300 GAATATAACATTATCAGCATTCCAGGTTGATTGGATGAAAGAAGCAAACG    349
                     |||||||.|.||||||||.||.||.|||||.|||||.||||||||.||||
BL02566___alr    297 GAATATATCGTTATCAGCTTTTCAAGTTGACTGGATTAAAGAAGCGAACG    346

BSNT_02911___    350 AGATATTGGAAAAAGAAGCGAG-TGCTAACCGGCTGGCCATTCATATTAA    398
                     |||||||||||||.||||| || |.|||||||||||||..|||||||.||
BL02566___alr    347 AGATATTGGAAAATGAAGC-AGATCCTAACCGGCTGGCTGTTCATATCAA    395

BSNT_02911___    399 CGTGGATACCGGCATGGGACGATTAGGTGTACGCACAAAGGAAGAACTTT    448
                     .|||||||||||||||||.||.|||||||||||.|||||||||.|.||||
BL02566___alr    396 TGTGGATACCGGCATGGGGCGTTTAGGTGTACGAACAAAGGAAAAGCTTT    445

BSNT_02911___    449 TAGAAGTAGTGAAAGCCTTAAAGGCAAGTAAATTCCTCAGATGGACAGGG    498
                     |||.|.|.|||.||||..|.|.|||||||.||..||||..||||..|||.
BL02566___alr    446 TAGCAATCGTGGAAGCGCTGACGGCAAGTGAAAACCTCGAATGGGAAGGA    495

BSNT_02911___    499 ATTTTCACACATTTTTCGACAGCTGATGAACCGGACACAACACTCACAAA    548
                     |||||.||.||||||||.||||||||.||||||||.||....||.||.|.
BL02566___alr    496 ATTTTTACGCATTTTTCCACAGCTGACGAACCGGATACTGAGCTAACCAT    545

BSNT_02911___    549 GCTGCAGCACGAAAAATTCATCAGTTTTCTCAGCTTTTTAAAAAAACAGG    598
                     |.|.||.||||||||.||.|||||.|||||..|||||.|.|||.||||.|
BL02566___alr    546 GATTCAACACGAAAAGTTTATCAGCTTTCTTCGCTTTCTGAAAGAACAAG    595

BSNT_02911___    599 GGATTGAGCTGCCCACCGTGCATATGTGCAACACGGCTGCAGCTATCGCT    648
                     |..||.|||||||.||.|||||||||..|||.|||||.||.||.||||||
BL02566___alr    596 GCTTTAAGCTGCCTACGGTGCATATGAACAATACGGCCGCGGCGATCGCT    645

BSNT_02911___    649 TTTCCGGAATTTAGCGCTGATATGATCCGTTTAGGTATCGGCTTATATGG    698
                     |||||||||||.||||||||||||||.||.|||||.|||||..|.|||||
BL02566___alr    646 TTTCCGGAATTCAGCGCTGATATGATTCGCTTAGGCATCGGAATGTATGG    695

BSNT_02911___    699 TTTATATCCTTCAGCCTATATTAAACAACTAAATCTCGTTAAGCTTGAAC    748
                     .|||||||||||.|..|||||.|..||.||.||||||||||||||||..|
BL02566___alr    696 ATTATATCCTTCCGATTATATCAGGCAGCTTAATCTCGTTAAGCTTGTGC    745

BSNT_02911___    749 CTGCGTTAAGTTTAAAGGCGCGCATCGCTTATGTGAAAACCATGCGGACA    798
                     ||||..||||.||.||||||||.|||||||||||||||||||||..|||.
BL02566___alr    746 CTGCACTAAGCTTGAAGGCGCGAATCGCTTATGTGAAAACCATGTTGACT    795

BSNT_02911___    799 GAACCCCGAACCGTTAGCTATGGTGCTACATACGTCGCAGAGCCTAATGA    848
                     |||||.||.||.|||||.||||||||||||||.||.|||||||.....||
BL02566___alr    796 GAACCGCGGACGGTTAGTTATGGTGCTACATATGTTGCAGAGCGCGGGGA    845

BSNT_02911___    849 AGTAATTGCTACACTCCCGATTGGCTATGCTGACGGCTATTCTCGTGCCC    898
                     |||.|||||.|||.|.|||.|.||||||||||||||||||||.||||..|
BL02566___alr    846 AGTCATTGCCACAATTCCGGTCGGCTATGCTGACGGCTATTCCCGTGAAC    895

BSNT_02911___    899 TTTCCAATCGCGGGTTTGTTCTTCATCGCGGAAAACGAGTGCCAGTGGCA    948
                     |||||||.|||||.|||.||||||||||.||||.|||||||||.|||||.
BL02566___alr    896 TTTCCAACCGCGGTTTTATTCTTCATCGAGGAAGACGAGTGCCGGTGGCG    945

BSNT_02911___    949 GGAAGAGTAACAATGGATATGATCATGGTCAGTTTAGGAGAAAACGGTGA    998
                     |||||||||||||||||||||||.|||||||||.|.||||   |.|||||
BL02566___alr    946 GGAAGAGTAACAATGGATATGATAATGGTCAGTCTGGGAG---AGGGTGA    992

BSNT_02911___    999 AGGTAAACAAGGAGATGAAGTCGTGATTTACGGTAAGCAAAAAGGAGCCG   1048
                     |||||||||||||||.|||||||||||||||||...||||||.|||||.|
BL02566___alr    993 AGGTAAACAAGGAGAGGAAGTCGTGATTTACGGCCGGCAAAAGGGAGCAG   1042

BSNT_02911___   1049 AGATTTCCGTTGATGAAGTGGCTGAAATGCTCAATACGATTAACTATGAA   1098
                     ||||.||.|||||||||.|.||.||||||||..|||||||.|||||||||
BL02566___alr   1043 AGATATCTGTTGATGAAATTGCGGAAATGCTTGATACGATCAACTATGAA   1092

BSNT_02911___   1099 GTCGTGTCTACATTAAGCCGCCGCATCCCTCGTTTTTATATAAGAGATGG   1148
                     ||.||.|||||..|||||.|.|||.||||||||||||||||||||||.||
BL02566___alr   1093 GTGGTATCTACCATAAGCTGGCGCGTCCCTCGTTTTTATATAAGAGACGG   1142

BSNT_02911___   1149 CGAGATTTTTAAAGTATCAACTCCAGTATTATACGTATAG   1188
                     |||||||||||||...||.||.||..|.||||||||.|||
BL02566___alr   1143 CGAGATTTTTAAAAAGTCGACCCCGCTGTTATACGTGTAG   1182


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