Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02911 and BL02566
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:37
# Commandline: needle
# -asequence dna-align/BSNT_02911___yncD.1.5803.seq
# -bsequence dna-align/BL02566___alr2.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02911___yncD-BL02566___alr2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02911___yncD-BL02566___alr2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02911___yncD
# 2: BL02566___alr2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1190
# Identity: 974/1190 (81.8%)
# Similarity: 974/1190 (81.8%)
# Gaps: 10/1190 ( 0.8%)
# Score: 3995.0
#
#
#=======================================
BSNT_02911___ 1 TTGATGATAAAGCTTTGCCGAGAAGTTTGGATCGAAGTCAATCTTGATGC 50
||||.||||||||||||.|||||||||.|.||.||.|||||||||||
BL02566___alr 1 ---ATGAAAAAGCTTTGCCGTGAAGTTTGGGTAGAGGTAAATCTTGATGC 47
BSNT_02911___ 51 CGTTAAAAAGAATTTGCGAGCGATCCGCCGTCATATTCCACATAAGAGCA 100
..|.|||||.||||||||.|||.|.||.||.||||||||..|.|||||||
BL02566___alr 48 GATCAAAAAAAATTTGCGCGCGTTTCGGCGGCATATTCCGAAAAAGAGCA 97
BSNT_02911___ 101 AAATTATGGCTGTCGTAAAAGCGAACGGTTATGGTCACGGGTCTATAGAA 150
|||||||||||||||||||||||||.|.||||||||||||.||..|.|||
BL02566___alr 98 AAATTATGGCTGTCGTAAAAGCGAATGCTTATGGTCACGGATCGGTGGAA 147
BSNT_02911___ 151 GTGGCACGCCATGCACTGGAACACGGGGCGAGTGAGCTTGCTGTTGCCAG 200
||.||||||||||||||.|||||.||.|||||||||||.||.||||||..
BL02566___alr 148 GTTGCACGCCATGCACTTGAACATGGTGCGAGTGAGCTCGCCGTTGCCTC 197
BSNT_02911___ 201 TGTGGAGGAAGGAATCGTTTTACGTAAAGCTGGGATTACAGCACCTATCC 250
.||||||||||...||||||||||.|||||.|||||||.|||.||.||||
BL02566___alr 198 GGTGGAGGAAGCGGTCGTTTTACGAAAAGCGGGGATTAAAGCGCCGATCC 247
BSNT_02911___ 251 TTGTGCTTGGTTTTACATCCCTTAGTTGTGT-AAAGAAGTCAGCAGCTTG 299
|||||||||||||.||..|.||.||.||||| ||||||| |.||||||||
BL02566___alr 248 TTGTGCTTGGTTTCACCCCGCTGAGCTGTGTGAAAGAAG-CGGCAGCTTG 296
BSNT_02911___ 300 GAATATAACATTATCAGCATTCCAGGTTGATTGGATGAAAGAAGCAAACG 349
|||||||.|.||||||||.||.||.|||||.|||||.||||||||.||||
BL02566___alr 297 GAATATATCGTTATCAGCTTTTCAAGTTGACTGGATTAAAGAAGCGAACG 346
BSNT_02911___ 350 AGATATTGGAAAAAGAAGCGAG-TGCTAACCGGCTGGCCATTCATATTAA 398
|||||||||||||.||||| || |.|||||||||||||..|||||||.||
BL02566___alr 347 AGATATTGGAAAATGAAGC-AGATCCTAACCGGCTGGCTGTTCATATCAA 395
BSNT_02911___ 399 CGTGGATACCGGCATGGGACGATTAGGTGTACGCACAAAGGAAGAACTTT 448
.|||||||||||||||||.||.|||||||||||.|||||||||.|.||||
BL02566___alr 396 TGTGGATACCGGCATGGGGCGTTTAGGTGTACGAACAAAGGAAAAGCTTT 445
BSNT_02911___ 449 TAGAAGTAGTGAAAGCCTTAAAGGCAAGTAAATTCCTCAGATGGACAGGG 498
|||.|.|.|||.||||..|.|.|||||||.||..||||..||||..|||.
BL02566___alr 446 TAGCAATCGTGGAAGCGCTGACGGCAAGTGAAAACCTCGAATGGGAAGGA 495
BSNT_02911___ 499 ATTTTCACACATTTTTCGACAGCTGATGAACCGGACACAACACTCACAAA 548
|||||.||.||||||||.||||||||.||||||||.||....||.||.|.
BL02566___alr 496 ATTTTTACGCATTTTTCCACAGCTGACGAACCGGATACTGAGCTAACCAT 545
BSNT_02911___ 549 GCTGCAGCACGAAAAATTCATCAGTTTTCTCAGCTTTTTAAAAAAACAGG 598
|.|.||.||||||||.||.|||||.|||||..|||||.|.|||.||||.|
BL02566___alr 546 GATTCAACACGAAAAGTTTATCAGCTTTCTTCGCTTTCTGAAAGAACAAG 595
BSNT_02911___ 599 GGATTGAGCTGCCCACCGTGCATATGTGCAACACGGCTGCAGCTATCGCT 648
|..||.|||||||.||.|||||||||..|||.|||||.||.||.||||||
BL02566___alr 596 GCTTTAAGCTGCCTACGGTGCATATGAACAATACGGCCGCGGCGATCGCT 645
BSNT_02911___ 649 TTTCCGGAATTTAGCGCTGATATGATCCGTTTAGGTATCGGCTTATATGG 698
|||||||||||.||||||||||||||.||.|||||.|||||..|.|||||
BL02566___alr 646 TTTCCGGAATTCAGCGCTGATATGATTCGCTTAGGCATCGGAATGTATGG 695
BSNT_02911___ 699 TTTATATCCTTCAGCCTATATTAAACAACTAAATCTCGTTAAGCTTGAAC 748
.|||||||||||.|..|||||.|..||.||.||||||||||||||||..|
BL02566___alr 696 ATTATATCCTTCCGATTATATCAGGCAGCTTAATCTCGTTAAGCTTGTGC 745
BSNT_02911___ 749 CTGCGTTAAGTTTAAAGGCGCGCATCGCTTATGTGAAAACCATGCGGACA 798
||||..||||.||.||||||||.|||||||||||||||||||||..|||.
BL02566___alr 746 CTGCACTAAGCTTGAAGGCGCGAATCGCTTATGTGAAAACCATGTTGACT 795
BSNT_02911___ 799 GAACCCCGAACCGTTAGCTATGGTGCTACATACGTCGCAGAGCCTAATGA 848
|||||.||.||.|||||.||||||||||||||.||.|||||||.....||
BL02566___alr 796 GAACCGCGGACGGTTAGTTATGGTGCTACATATGTTGCAGAGCGCGGGGA 845
BSNT_02911___ 849 AGTAATTGCTACACTCCCGATTGGCTATGCTGACGGCTATTCTCGTGCCC 898
|||.|||||.|||.|.|||.|.||||||||||||||||||||.||||..|
BL02566___alr 846 AGTCATTGCCACAATTCCGGTCGGCTATGCTGACGGCTATTCCCGTGAAC 895
BSNT_02911___ 899 TTTCCAATCGCGGGTTTGTTCTTCATCGCGGAAAACGAGTGCCAGTGGCA 948
|||||||.|||||.|||.||||||||||.||||.|||||||||.|||||.
BL02566___alr 896 TTTCCAACCGCGGTTTTATTCTTCATCGAGGAAGACGAGTGCCGGTGGCG 945
BSNT_02911___ 949 GGAAGAGTAACAATGGATATGATCATGGTCAGTTTAGGAGAAAACGGTGA 998
|||||||||||||||||||||||.|||||||||.|.|||| |.|||||
BL02566___alr 946 GGAAGAGTAACAATGGATATGATAATGGTCAGTCTGGGAG---AGGGTGA 992
BSNT_02911___ 999 AGGTAAACAAGGAGATGAAGTCGTGATTTACGGTAAGCAAAAAGGAGCCG 1048
|||||||||||||||.|||||||||||||||||...||||||.|||||.|
BL02566___alr 993 AGGTAAACAAGGAGAGGAAGTCGTGATTTACGGCCGGCAAAAGGGAGCAG 1042
BSNT_02911___ 1049 AGATTTCCGTTGATGAAGTGGCTGAAATGCTCAATACGATTAACTATGAA 1098
||||.||.|||||||||.|.||.||||||||..|||||||.|||||||||
BL02566___alr 1043 AGATATCTGTTGATGAAATTGCGGAAATGCTTGATACGATCAACTATGAA 1092
BSNT_02911___ 1099 GTCGTGTCTACATTAAGCCGCCGCATCCCTCGTTTTTATATAAGAGATGG 1148
||.||.|||||..|||||.|.|||.||||||||||||||||||||||.||
BL02566___alr 1093 GTGGTATCTACCATAAGCTGGCGCGTCCCTCGTTTTTATATAAGAGACGG 1142
BSNT_02911___ 1149 CGAGATTTTTAAAGTATCAACTCCAGTATTATACGTATAG 1188
|||||||||||||...||.||.||..|.||||||||.|||
BL02566___alr 1143 CGAGATTTTTAAAAAGTCGACCCCGCTGTTATACGTGTAG 1182
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