Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04651 and BL02544
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:48
# Commandline: needle
# -asequence dna-align/BSNT_04651___mrpA.1.5803.seq
# -bsequence dna-align/BL02544___mrpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04651___mrpA-BL02544___mrpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04651___mrpA-BL02544___mrpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04651___mrpA
# 2: BL02544___mrpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2490
# Identity: 1737/2490 (69.8%)
# Similarity: 1737/2490 (69.8%)
# Gaps: 171/2490 ( 6.9%)
# Score: 5770.5
#
#
#=======================================
BSNT_04651___ 1 -TTGCAGCTCTTACATCTTGCTATTTTATCGCCTTTTTTATTTGCTTTTA 49
|..|..|| ||||||.||||||||||||||||||||..|.|.||.||..
BL02544___mrp 1 ATGACGTCT-TTACATATTGCTATTTTATCGCCTTTTGCACTCGCCTTCT 49
BSNT_04651___ 50 TCATTCCCTTCTTGGCAAAATACG-CAAAAAGAGTGCATACGGGCTGGTT 98
|.|||||..|.|||||.|||.||| ||.||||| |.|||||.||||||||
BL02544___mrp 50 TGATTCCGCTATTGGCGAAAAACGTCAGAAAGA-TTCATACAGGCTGGTT 98
BSNT_04651___ 99 TGTGTTGATCCTGCCCGTCTTGCTGTTTATATACTTTCTCCCAATGATCA 148
|||..||.|.||.||.||..|..|.|||||.||.|||.|||..|||||||
BL02544___mrp 99 TGTCCTGTTTCTTCCTGTTCTATTATTTATTTATTTTTTCCGCATGATCA 148
BSNT_04651___ 149 GGATGACACAGTCTGGAGAAACACTTCGA-TCGGTATTAGAGTGGATTCC 197
..|||||...|..|||.|.|||| ||..| .|.|||.|.||.||||||||
BL02544___mrp 149 AAATGACGGCGGATGGCGGAACA-TTAAAGGCTGTACTGGAATGGATTCC 197
BSNT_04651___ 198 GTCACTCGGCATTAACTTTACCGTTTATATAGACGGCCTCGGGTTATTAT 247
|||..|.||.|||||||||||||..||..|.|||||.|||||.||..|||
BL02544___mrp 198 GTCCTTTGGGATTAACTTTACCGCGTACGTTGACGGACTCGGATTGCTAT 247
BSNT_04651___ 248 TCGCTTTACTGATCACAGGCATTGGCTCTTTGGTCACTCTTTACAGCATT 297
||||..|.|||||.|||||.||.||.||||||||....|||||||||||.
BL02544___mrp 248 TCGCCCTTCTGATTACAGGGATCGGGTCTTTGGTTGTCCTTTACAGCATC 297
BSNT_04651___ 298 TTTTATTTATCGAAAGAAAAAGAACAGCTTGGGCCCTTTTATGTCTACTT 347
|.||||.|.||.|||||||.|||.|||||.||.||.|||||.|| ||
BL02544___mrp 298 TATTATCTGTCTAAAGAAAGAGAGCAGCTCGGACCATTTTACGT----TT 343
BSNT_04651___ 348 AT----TGATGTTCATGGGCGCCATGCTCGGTGTCGTTCTAGTAGACAAT 393
|| |.|||||||||||.||.||||||||.||.|||||.||.||.||.
BL02544___mrp 344 ATCTGCTCATGTTCATGGGGGCAATGCTCGGCGTTGTTCTCGTTGATAAC 393
BSNT_04651___ 394 GTCATGGTTCTCTACATGTTCTGGGAGCTTACAAGCCTTTCATCCTTTTT 443
|||||.||.||.||..||||.|||||..|.||.|||.|.||.||.|||.|
BL02544___mrp 394 GTCATTGTACTTTATTTGTTTTGGGAATTGACCAGCATATCGTCTTTTCT 443
BSNT_04651___ 444 GCTGATCGGCTATTGGTATAAGCGGGAAAAGTCGCGCTATGGCGCAGCCA 493
|||.||||||||||||||.|||||||||||.||..|.||.|||||..|.|
BL02544___mrp 444 GCTCATCGGCTATTGGTACAAGCGGGAAAAATCAAGATACGGCGCGACAA 493
BSNT_04651___ 494 AATC-ACTTTTGATTACGGTCA------GCGGCGGGCTGTGCATGCTCGG 536
|||| | ||.||| ||| .||||||.||.|.||||||.||
BL02544___mrp 494 AATCGA----TGCTTA---TCACCATATTCGGCGGTCTTTCCATGCTTGG 536
BSNT_04651___ 537 CGGATTTATTCTCCTTTATTTGATAACGGATTCCTTCAGTATTCGAGAGA 586
.||.||.|||||.|||||...|||.||.|.|||.|||...|||.||||.|
BL02544___mrp 537 AGGCTTCATTCTTCTTTACACGATCACAGGTTCATTCTCGATTAGAGAAA 586
BSNT_04651___ 587 TGGTTCATCAGGTTCAATTAATTGCCGGCCACGAATTGTTTATCCCGGCT 636
||.|..|.||||||.|.||||||.|.||.||||..||.||.|||||||||
BL02544___mrp 587 TGATCAACCAGGTTGATTTAATTTCGGGGCACGGCTTTTTCATCCCGGCT 636
BSNT_04651___ 637 ATGATTCTCATTTTATTAGGGGCTTTTACGAAATCAGCGCAATTTCCTTT 686
.|..|.||..|.|||.|.||.||.||.||.|||||.|||||.||.|||||
BL02544___mrp 637 CTCGTGCTGGTGTTAATCGGAGCCTTCACTAAATCTGCGCAGTTCCCTTT 686
BSNT_04651___ 687 TTACATCTGGCTCCCTGACGCGATGGAAGCTCCGACGCCTGTCAGCGCTT 736
||||||||||||.||.|||||.||||||||.||.||||||||.||.||||
BL02544___mrp 687 TTACATCTGGCTTCCGGACGCAATGGAAGCACCAACGCCTGTAAGTGCTT 736
BSNT_04651___ 737 ATCTCCATTCAGCTACTATGGTAAAAGCCGGCATTTATGTGATTGCGAGA 786
|.||.||.||.||.||.|||||||||||.||.||||||.|..||||.|||
BL02544___mrp 737 ACCTGCACTCCGCCACGATGGTAAAAGCGGGAATTTATATCGTTGCAAGA 786
BSNT_04651___ 787 TTCAGTCCTATTTTCGCCTTTTCAGCTCAGTGGTTTTGGATCGTGTCCCT 836
||||..|||.|.|||||.|||||||...|.|||||||||||||||||.||
BL02544___mrp 787 TTCACCCCTGTGTTCGCTTTTTCAGGGGAATGGTTTTGGATCGTGTCTCT 836
BSNT_04651___ 837 C------GTTGGC-CTCTTTACGATGGTTTGGGGTTCATTCCATGCCGTG 879
| .|||.| |.|||| |.||||||||.|||.|.|||||.
BL02544___mrp 837 CACGGGGATTGTCACGCTTT-------TCTGGGGTTCGTTCAACGCCGTC 879
BSNT_04651___ 880 AAACAAACTGATTTAAAATCGATTTTGGCGTTTTCAACCGTCAGCCAGCT 929
||.||.||||||.|.||||||||..|.||.|||||.||.|||||||||||
BL02544___mrp 880 AAGCAGACTGATCTGAAATCGATACTTGCATTTTCTACGGTCAGCCAGCT 929
BSNT_04651___ 930 CGGCATGATCATCTCCATGCTCGGAGTCAGTGCTGCGGCCCTTCATTATG 979
|||.||||||||.||.|||||.||.|||.|.||.||.||.||.||||.|.
BL02544___mrp 930 CGGAATGATCATGTCGATGCTTGGCGTCGGAGCGGCCGCACTGCATTTTC 979
BSNT_04651___ 980 GCCATACAGAATATTATACAGTTGCCGCTATGGCTGCCATTTTCCATTTG 1029
..|||...|||||.||.|..|||||.|..||.||.||.||.||.||.|||
BL02544___mrp 980 AGCATTTTGAATACTACATGGTTGCAGTAATCGCCGCTATCTTTCACTTG 1029
BSNT_04651___ 1030 ATCAACCACGCAACCTTTAAAGGAAGCTTGTTTATGGCAGTCGGGATTAT 1079
||.|||||.||.||.||.|||||.|||||.||.|||||||||||.||.||
BL02544___mrp 1030 ATTAACCATGCGACTTTCAAAGGCAGCTTATTCATGGCAGTCGGAATCAT 1079
BSNT_04651___ 1080 CGATCACGAAACAGGCACACGGGATATCCGGAAGCTAGGCGGCCTGATGG 1129
|||.||.||||||||.||..|.||||||||.|||||.||||||||.|||.
BL02544___mrp 1080 CGACCATGAAACAGGTACGAGAGATATCCGCAAGCTCGGCGGCCTTATGA 1129
BSNT_04651___ 1130 CGATTATGCCGATTACATTTACCATTTCCTTAATCGGGACATTTTCAATG 1179
||||.|||||||||||.|||||.|||.|..|.|||||..|.|||||||||
BL02544___mrp 1130 CGATCATGCCGATTACGTTTACGATTACGCTCATCGGCGCGTTTTCAATG 1179
BSNT_04651___ 1180 GCCGGCCTACCGCCGTTTAACGGATTTTTGAGTAAAGAAATGTTTTTCAC 1229
|||||.||.||.|||||.|||||.||||||||.||.||||||||.|||||
BL02544___mrp 1180 GCCGGACTGCCTCCGTTCAACGGCTTTTTGAGCAAGGAAATGTTCTTCAC 1229
BSNT_04651___ 1230 AAGCATGCTTCGCGTGACACATTTTGACCTGTTCAACG-TGCAGACATGG 1278
.||||||||..|..|.||..|.|||.||.|||..|||| || |.||||||
BL02544___mrp 1230 CAGCATGCTCAGGATTACGAACTTTAACTTGTATAACGCTG-ACACATGG 1278
BSNT_04651___ 1279 GGCGTTCTGTTCCCTCTTTTCGCCTGGATCGGAAGTGTATTTACGTTTAT 1328
||..||||.||.|||.|..|.||.|||||||||||.||.|||||.||.||
BL02544___mrp 1279 GGTTTTCTCTTTCCTGTGCTGGCTTGGATCGGAAGCGTGTTTACATTCAT 1328
BSNT_04651___ 1329 CTACAGCATGAAATTGCTGTTTAAAACATTCAGAGGAAATTACCAGCCTG 1378
.|||.|||||....|..|.||||||||.|||.|.|||||.||.|||||||
BL02544___mrp 1329 TTACTGCATGGTTCTCTTATTTAAAACCTTCGGGGGAAAATATCAGCCTG 1378
BSNT_04651___ 1379 AACAGCTTGAAAAACCGGCTCACGAGGCGCCTGTCGGCATGCTCGTACCA 1428
||.||||||||||||..||.||.|||||.||..||||||||||..|..|.
BL02544___mrp 1379 AAAAGCTTGAAAAACAAGCGCATGAGGCTCCAATCGGCATGCTGATTTCG 1428
BSNT_04651___ 1429 CCGGTCATTCTTGTCGCTTTGGCTGTCAGTCTCTTCTTTTTCCCGAATAT 1478
|||.|..|.||.||..||.|.|..||.|.|.|.||||||||||||||.||
BL02544___mrp 1429 CCGATTGTCCTCGTATCTCTCGTGGTGATTTTTTTCTTTTTCCCGAACAT 1478
BSNT_04651___ 1479 ATTGTCGTACAGCCTGATAGAGCCTGCGATGAA--CTCAATCTAT-CCGA 1525
..||||.||||||.|.||.||.||||| ||.| .||.|| ||| ||||
BL02544___mrp 1479 TCTGTCATACAGCATCATTGAACCTGC--TGCAGCGTCGAT-TATGCCGA 1525
BSNT_04651___ 1526 CACTGCTTGCCGGCCATGAGAAATTCCACGTTCACATTTCACA-GTGGCA 1574
|.||..|.|.|||..|.||.||||||.|.|||||.|||| ||| ||||||
BL02544___mrp 1526 CCCTTTTGGACGGTGACGAAAAATTCAAGGTTCATATTT-ACATGTGGCA 1574
BSNT_04651___ 1575 TGGGGTTACAACGGAATTGCTC---ATGA----CTGCGGGTATTGTTGTG 1617
.||..||.|.||.|| |||| |||| |.||| |.||||..
BL02544___mrp 1575 CGGCTTTTCGACTGA---GCTCTATATGACGATCGGCG----TCGTTGCT 1617
BSNT_04651___ 1618 ATCGGAACAATTGGT-------TATTTGTCGCTGAATAAGTGGAAAGGAA 1660
.||||| || ||||||.|..||...||.||| .||||
BL02544___mrp 1618 CTCGGA-------GTTCTCGCCTATTTGACCTTGTCAAAATGG--CGGAA 1658
BSNT_04651___ 1661 --TCTATAAACTGTTTCCTTCGAA--ACTCACACTCAACCGGTTATACGA 1706
||||....||.||.|| .||| |||.||.||.|||..|||.|||||
BL02544___mrp 1659 GGTCTACGGCCTCTTCCC--GGAAACACTGACGCTGAACAAGTTGTACGA 1706
BSNT_04651___ 1707 TAAGCTTTTGACTCT------GATGGAGAAAGGCTCTTACCGGATCACAA 1750
.|||| |.|| |.|.||.||||||||..||..|||.||||
BL02544___mrp 1707 -CAGCT-----CGCTGTCAGGGCTTGAAAAAGGCTCCAACAAGATTACAA 1750
BSNT_04651___ 1751 -AACAATATATGACCGGGTTTTTAAGAGATTATTTGCTGTATA------- 1792
||| .||||||||.||||||.|..|.||.|||.| |||.||
BL02544___mrp 1751 GAAC-GTATATGACAGGGTTTCTCCGCGACTATCT--TGTTTATGTTTTT 1797
BSNT_04651___ 1793 -TCTTCGCTGGTTTCATCATTCTGATAGGCGGAGCTTTTGCCATTAAAGG 1841
||||| ||.|||.|..|.||.||||||.|..|.||..|||..||
BL02544___mrp 1798 GTCTTC------TTTATCGTGATCATCGGCGGATCGCTCGCTGTTACCGG 1841
BSNT_04651___ 1842 CGGATTTTCATTTAAAAC-----GGAAGGCATGGCTAAAATCGGTGTATA 1886
.||.||||||| || |.||||||..|||..||||||.||.||
BL02544___mrp 1842 GGGCTTTTCAT-----ACGATGTGAAAGGCAATGCTTCAATCGGCGTCTA 1886
BSNT_04651___ 1887 CGAAATCATTTTGAC-GCTTGTCATGATCAGCGCCACAGTGGCGACTGTT 1935
.||..||.||.||.| || .||.|||||...|||.||..|..|.||.|||
BL02544___mrp 1887 TGAGCTCGTTCTGTCAGC-CGTAATGATTGCCGCAACCTTTACCACCGTT 1935
BSNT_04651___ 1936 TTTGCTAGGTCAAGACTGACGGCGATCATTGCACTCGGTGTTGTCGGTTA 1985
|||||.||||||||||||||||||||.||.|.||||||.||..||||.||
BL02544___mrp 1936 TTTGCAAGGTCAAGACTGACGGCGATTATCGGACTCGGCGTCATCGGCTA 1985
BSNT_04651___ 1986 TACGCTTGCATTGTTTTTTGTCATTTTCAGAGCGCCGGATTTGGCATTGA 2035
.|||||.||..||||.||||||||||||||.|||||||||.|.||..|||
BL02544___mrp 1986 CACGCTCGCGCTGTTCTTTGTCATTTTCAGGGCGCCGGATCTCGCGCTGA 2035
BSNT_04651___ 2036 CCCAGCTCGTCATTGAAACGATTTCTGTGGCACTGTTTCTGCTTTGCTTC 2085
|.|||||..||||.|||||.|||||.||.|||.||||.|||||.||||||
BL02544___mrp 2036 CGCAGCTGATCATCGAAACCATTTCAGTCGCATTGTTCCTGCTGTGCTTC 2085
BSNT_04651___ 2086 TACCATTTGCCGAAACTGAGGCTGAAAACAAAAACGAGAACGTTCCGGAT 2135
||.|||||||||||.||.||..|.||..|.|||.||...|.||||.||.|
BL02544___mrp 2086 TATCATTTGCCGAAGCTCAGATTTAAGCCGAAATCGGCTAGGTTCAGGGT 2135
BSNT_04651___ 2136 GACGAA-----TTTTATCATTTCTTTAGGCGTCGGTATTATTGTTACTCT 2180
.||.|| ||.|| ||..|.||||||||.|.|.||||.||.||
BL02544___mrp 2136 CACAAATGCGCTTGTA-----TCGGTCGGCGTCGGAACTGTTGTGACGCT 2180
BSNT_04651___ 2181 GCTTGGTATCGCATCCTCA------AGCCAACGGACAAAAGACAGCATTG 2224
|| |||||...||| |||||.||..|....||.|||||||
BL02544___mrp 2181 GC------TCGCACTTTCAGCAAACAGCCAGCGCTCGCTTGAAAGCATTG 2224
BSNT_04651___ 2225 CGTCCTTCTTTGTCAAACACAGCCACGATCTCGGCGGAGGGGATAATGTC 2274
|.||.|..|||.|..||.|||||.|..|.||||..||.||..|.|||.||
BL02544___mrp 2225 CATCGTATTTTATTGAAAACAGCTATAAACTCGCAGGCGGCCACAATATC 2274
BSNT_04651___ 2275 GTCAATGTCATTCTTGTTGATTTCAGGGGATTTGATACAATGTTTGAAAT 2324
|||||.||.||..|.||.||.||||||||||||||||||.||||||||||
BL02544___mrp 2275 GTCAACGTAATATTGGTCGACTTCAGGGGATTTGATACATTGTTTGAAAT 2324
BSNT_04651___ 2325 TACGGTA-TTAACAATAGCCGCTCTCGGCATTTACAGCATGATTAAAACA 2373
|||.||| ||..| ||.||||||.|.||.||.|||.||||||| ||
BL02544___mrp 2325 TACCGTACTTGTC-ATTGCCGCTTTAGGAATATACGGCATGAT-----CA 2368
BSNT_04651___ 2374 -------AAAGTAAAAGAGGAGGGGAAAAGCGGTGAATGA 2406
|..|.|.|| ||||||||||.|||..|||
BL02544___mrp 2369 GGCTCAGATTGGAGAA-AGGAGGGGAAGAGCATTGA---- 2403
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