Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00409 and BL02542
See
Amino acid alignment /
Visit
BSNT_00409 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00409___psd.1.5803.seq
# -bsequence dna-align/BL02542___psd.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00409___psd-BL02542___psd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00409___psd-BL02542___psd.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00409___psd
# 2: BL02542___psd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 919
# Identity: 500/919 (54.4%)
# Similarity: 500/919 (54.4%)
# Gaps: 254/919 (27.6%)
# Score: 1154.0
#
#
#=======================================
BSNT_00409___ 1 ATGTTTAATACGGCTGTAAAGATTCTGTATCGATCATTGATAGAGCTGAC 50
||.|| ||||...||.||.||.|..|||||.|||.||||
BL02542___psd 1 ---TTGAA---------AAAGCGGCTTTACCGGTTTTTGATTGAGTTGAC 38
BSNT_00409___ 51 GAATCA-----TCGTCTGTC----ATCCTATCTGATTAAAGGATTTTGC- 90
||||.| .|| |||| ||.|| .|| |||| |||||
BL02542___psd 39 GAATAAAAAGGGCG--TGTCCCGGATGCT---GGA--AAAG---TTTGCT 78
BSNT_00409___ 91 GAGTCAAAAATCAGCAAACCGGTCATTCCGCT--TTTCTCAAAACATTTT 138
.|||||||..|.||||||||..||| |||.|| |.|.||||||| .|||
BL02542___psd 79 CAGTCAAAGCTAAGCAAACCTCTCA-TCCCCTCCTATATCAAAAC-CTTT 126
BSNT_00409___ 139 CGGCTGAAT----------TG--GGATGATGTGGACGGTACGGCTGCTGA 176
|...|.||| || |||.||||| |.||| ||..
BL02542___psd 127 CATATTAATACAGAAGAGATGCTGGAAGATGT--------CCGCT-CTTT 167
BSNT_00409___ 177 TTACGGATCGCTGTCTGAATTGTTTATTCGACAAATAAATCTGGAGCGG- 225
|.||.| .|||...||..||||.||..||.||.|||| ||||||
BL02542___psd 168 TAACAG---CCTGCACGAGCTGTTCATCAGAAAATTAAA----GAGCGGT 210
BSNT_00409___ 226 ---CGCC---------CTGTGTCAAAAGAGGCGCATGCGGTGGTCAGCCC 263
|||| ||| .||.|||.||.| ||||||||||
BL02542___psd 211 GCACGCCCCCTTCCCGCTG-ATCCAAACAGCC--------TGGTCAGCCC 251
BSNT_00409___ 264 TGTTGACGGTGTGGTTCA--GACGGTAGGAAT------CATCAACCCG-- 303
|||.|||||.| ||| || ||.||| |||| ||.||
BL02542___psd 252 TGTGGACGGCG----TCATCGA----AGAAATGGGCACCATC-ACGCGCG 292
BSNT_00409___ 304 --AATCAAACCTTTACGGTGAAGGGAAAAGATTACTC-ATTC----GCTG 346
||.||| |||||.||.||...||| |||| |||| |..|
BL02542___psd 293 ACAAGCAA---TTTACCGTCAAACAAAA-----ACTCTATTCTGTAGAAG 334
BSNT_00409___ 347 AACTGACCGGCTGTAAAAGCGCAGACCATCAA----TACAACGGCGGATA 392
||.|||.||| |..|.|..|||.|.|.|| ||...|||||||..
BL02542___psd 335 AAATGATCGG----ACGATCCGAGATCGTGAACCGCTATGTCGGCGGAAC 380
BSNT_00409___ 393 CTTCGTCGTGCTGTATTTAAGCCCGAGGCATTATCACCG--TTTCCATTC 440
||...||.|..|.||||||||.|||||..|.||.|||.| ||..|| .|
BL02542___psd 381 CTATATCATTATCTATTTAAGTCCGAGAGACTACCACAGAATTCACA-GC 429
BSNT_00409___ 441 TCCGATTAGCTGCAGGTATCAAAAGCTGGCCGAGCTCGGAAATCGC---T 487
.|.|.||| |.|||....|.|||.||.|.....|||.|||| || |
BL02542___psd 430 CCGGCTTA-CGGCACACTTGAAACGCAGTATTCGCTGGGAA---GCACGT 475
BSNT_00409___ 488 CATACCCGGTAAATCAATTAGGCTTAAAATACGGGAAAGATGT----GCT 533
|.|||||.||.|||.||.|.||.||.|.|||||||||| | |||
BL02542___psd 476 CTTACCCTGTGAATAAAATCGGTTTGACATACGGGAAA----TCGCCGCT 521
BSNT_00409___ 534 GTCGAAAAATTACC----GATTT----GTGTACGAGC-TGAATAGTGGCA 574
|.|.|||||.|||| ||||| .|.|| ||| |.|||| |||
BL02542___psd 522 GACAAAAAACTACCGGATGATTTCCGAATTTA--AGCATCAATA-TGG-- 566
BSNT_00409___ 575 GCCGAAATGTCC----------TGATGATTCCTGTCGGCGCGATGAATAT 614
|||| |||.| |||||.||||||.||||
BL02542___psd 567 --------GTCCGCCCTGCTTGTGAAG------GTCGGAGCGATGTATAT 602
BSNT_00409___ 615 TAATTCTATCGTG------CAGACG--AATACCCGTACTGAATTG----G 652
|||.||.|||||| |||..| ||.| ||||.| |
BL02542___psd 603 TAACTCGATCGTGATGCTCCAGGAGTCAAAA--------GAATGGCGCCG 644
BSNT_00409___ 653 AGATCGGCGAAGAGCTGGGATACTTTTCATTTGGCTCAACCGTCATTTTG 702
| |||||.||..|.|.|||.||.||.||.|||||||||||.|||.||
BL02542___psd 645 A----GGCGACGAAATCGCATATTTCTCTTTCGGCTCAACCGTTATTCTG 690
BSNT_00409___ 703 ATTTTTGAAAAAGACGC----GTTCC-------AGCCGTCCGCCCATTTA 741
.|.||||||||.||..| .|||| .|||.||..|||..|
BL02542___psd 691 CTGTTTGAAAAGGATACCTTTATTCCTGATGAACGCCTTCACCCCTCT-- 738
BSNT_00409___ 742 GCAGAAGGCCAAGAAGTTCAAGTC------GGAGAACTGATAGGTT---- 781
.|||||||| |||||..||.||||.|
BL02542___psd 739 ---------------CTTCAAGTCAAAATGGGAGAGGTGTTAGGATCTCT 773
BSNT_00409___ 782 ------ATGAAGA--GTAA 792
|.|||.| .|||
BL02542___psd 774 TGCCAAAAGAACATCATAA 792
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.