Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00408 and BL02541

See Amino acid alignment / Visit BSNT_00408 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_00408___ybfM.1.5803.seq
#    -bsequence dna-align/BL02541___ybfM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00408___ybfM-BL02541___ybfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00408___ybfM-BL02541___ybfM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00408___ybfM
# 2: BL02541___ybfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity:     332/530 (62.6%)
# Similarity:   332/530 (62.6%)
# Gaps:          88/530 (16.6%)
# Score: 910.0
# 
#
#=======================================

BSNT_00408___      1 ATGGAATTAGTTCAGCAG--CTCATAGCGGATTACGGTTATCTCGCTATT     48
                     |||||.||.|  ||..||  .|.||..|..|.|||||.|||.||||.||.
BL02541___ybf      1 ATGGAGTTGG--CAAAAGAATTGATTTCCCAATACGGGTATTTCGCGATA     48

BSNT_00408___     49 TTTTTGATGTTGGTATTAGGGATTGTAGGATTGCCGATTCCAGATGAAGT     98
                     ||...||||.|.||..|.||.||||||||..|||||||.||.||||||||
BL02541___ybf     49 TTCGGGATGCTTGTCCTCGGAATTGTAGGCCTGCCGATACCCGATGAAGT     98

BSNT_00408___     99 AATGATGACCGTTGTTGGCTAT-----TTC-ACGCATACCGATGTGTTGA    142
                     .||||||||..||||.||.|||     ||| |..||||      |.||.|
BL02541___ybf     99 CATGATGACATTTGTCGGGTATCTGTCTTCTATTCATA------TATTAA    142

BSNT_00408___    143 ATTATGAGCTTTCGATATTGATTAGTTTTGTC-GGGGCTTTGTTAGGTAT    191
                     |.||||||.|.|...|.|||||.|||||| || ||.||..|.|.|||.||
BL02541___ybf    143 ACTATGAGATGTGCCTTTTGATCAGTTTT-TCAGGTGCGATATCAGGGAT    191

BSNT_00408___    192 GCTGATCAGCTACATGATT------GGCAGAAAAGCCGGACGCCCGTTTA    235
                     |||.|||||     |.|||      ||.|||||| .|||....|||.|..
BL02541___ybf    192 GCTCATCAG-----TTATTTTCTAGGGAAGAAAA-TCGGTAAACCGCTGC    235

BSNT_00408___    236 TCGACAAGTACGGCAAGTGGGTCGG-CTTAAAAGA----AAAAAGAATGA    280
                     ||||.||||.|||.||.|||.|||| ||     ||    .||||||.|| 
BL02541___ybf    236 TCGATAAGTTCGGGAAATGGATCGGTCT-----GACGCCGAAAAGACTG-    279

BSNT_00408___    281 TGAAA--GTGGAAAAATGG-ATGAAGAAATACGGTCCAT-----ATTCTC    322
                      ||.|  |||.|....||| .|||| ||||||||.||.|     ||||  
BL02541___ybf    280 -GACACCGTGCACCGCTGGTTTGAA-AAATACGGCCCGTGGACGATTC--    325

BSNT_00408___    323 TTATTTTAGGTTATTTTATTCCCGGCGTCAGACATGTGACGTGCTACTTT    372
                        ||||.||.||||||.|.|||||..||.|.||||||||.|||||..|.
BL02541___ybf    326 ---TTTTCGGCTATTTTGTCCCCGGAATCCGCCATGTGACATGCTATCTG    372

BSNT_00408___    373 TCGGGGATCGGCAAAATGGATCTGAAAACGT-----ATGT-TGCGTTTGC    416
                     ||.||.||...|.|.|||||..||||||.||     ||.| |||     |
BL02541___ybf    373 TCCGGCATGAACGAGATGGACATGAAAAGGTTCCTGATTTATGC-----C    417

BSNT_00408___    417 GGCAATC-GGCGCCTTTTTATGGTGCTTTGTTTTTATTACAATCGGAAGG    465
                     ||  ||| ||.||.|||.|.|||||..|||||||||||||.||||||   
BL02541___ybf    418 GG--ATCAGGAGCTTTTATTTGGTGTCTTGTTTTTATTACGATCGGA---    462

BSNT_00408___    466 GTT-----ATAGGGATTATTCATG-TTTAA    489
                       |     ||.||       |.|| |||||
BL02541___ybf    463 --TACACAATCGG-------CGTGATTTAA    483


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