Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00408 and BL02541
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00408___ybfM.1.5803.seq
# -bsequence dna-align/BL02541___ybfM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00408___ybfM-BL02541___ybfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00408___ybfM-BL02541___ybfM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00408___ybfM
# 2: BL02541___ybfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity: 332/530 (62.6%)
# Similarity: 332/530 (62.6%)
# Gaps: 88/530 (16.6%)
# Score: 910.0
#
#
#=======================================
BSNT_00408___ 1 ATGGAATTAGTTCAGCAG--CTCATAGCGGATTACGGTTATCTCGCTATT 48
|||||.||.| ||..|| .|.||..|..|.|||||.|||.||||.||.
BL02541___ybf 1 ATGGAGTTGG--CAAAAGAATTGATTTCCCAATACGGGTATTTCGCGATA 48
BSNT_00408___ 49 TTTTTGATGTTGGTATTAGGGATTGTAGGATTGCCGATTCCAGATGAAGT 98
||...||||.|.||..|.||.||||||||..|||||||.||.||||||||
BL02541___ybf 49 TTCGGGATGCTTGTCCTCGGAATTGTAGGCCTGCCGATACCCGATGAAGT 98
BSNT_00408___ 99 AATGATGACCGTTGTTGGCTAT-----TTC-ACGCATACCGATGTGTTGA 142
.||||||||..||||.||.||| ||| |..|||| |.||.|
BL02541___ybf 99 CATGATGACATTTGTCGGGTATCTGTCTTCTATTCATA------TATTAA 142
BSNT_00408___ 143 ATTATGAGCTTTCGATATTGATTAGTTTTGTC-GGGGCTTTGTTAGGTAT 191
|.||||||.|.|...|.|||||.|||||| || ||.||..|.|.|||.||
BL02541___ybf 143 ACTATGAGATGTGCCTTTTGATCAGTTTT-TCAGGTGCGATATCAGGGAT 191
BSNT_00408___ 192 GCTGATCAGCTACATGATT------GGCAGAAAAGCCGGACGCCCGTTTA 235
|||.||||| |.||| ||.|||||| .|||....|||.|..
BL02541___ybf 192 GCTCATCAG-----TTATTTTCTAGGGAAGAAAA-TCGGTAAACCGCTGC 235
BSNT_00408___ 236 TCGACAAGTACGGCAAGTGGGTCGG-CTTAAAAGA----AAAAAGAATGA 280
||||.||||.|||.||.|||.|||| || || .||||||.||
BL02541___ybf 236 TCGATAAGTTCGGGAAATGGATCGGTCT-----GACGCCGAAAAGACTG- 279
BSNT_00408___ 281 TGAAA--GTGGAAAAATGG-ATGAAGAAATACGGTCCAT-----ATTCTC 322
||.| |||.|....||| .|||| ||||||||.||.| ||||
BL02541___ybf 280 -GACACCGTGCACCGCTGGTTTGAA-AAATACGGCCCGTGGACGATTC-- 325
BSNT_00408___ 323 TTATTTTAGGTTATTTTATTCCCGGCGTCAGACATGTGACGTGCTACTTT 372
||||.||.||||||.|.|||||..||.|.||||||||.|||||..|.
BL02541___ybf 326 ---TTTTCGGCTATTTTGTCCCCGGAATCCGCCATGTGACATGCTATCTG 372
BSNT_00408___ 373 TCGGGGATCGGCAAAATGGATCTGAAAACGT-----ATGT-TGCGTTTGC 416
||.||.||...|.|.|||||..||||||.|| ||.| ||| |
BL02541___ybf 373 TCCGGCATGAACGAGATGGACATGAAAAGGTTCCTGATTTATGC-----C 417
BSNT_00408___ 417 GGCAATC-GGCGCCTTTTTATGGTGCTTTGTTTTTATTACAATCGGAAGG 465
|| ||| ||.||.|||.|.|||||..|||||||||||||.||||||
BL02541___ybf 418 GG--ATCAGGAGCTTTTATTTGGTGTCTTGTTTTTATTACGATCGGA--- 462
BSNT_00408___ 466 GTT-----ATAGGGATTATTCATG-TTTAA 489
| ||.|| |.|| |||||
BL02541___ybf 463 --TACACAATCGG-------CGTGATTTAA 483
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