Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00407 and BL02540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00407___pssA.1.5803.seq
# -bsequence dna-align/BL02540___pssA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00407___pssA-BL02540___pssA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00407___pssA-BL02540___pssA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00407___pssA
# 2: BL02540___pssA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity: 318/626 (50.8%)
# Similarity: 318/626 (50.8%)
# Gaps: 199/626 (31.8%)
# Score: 661.0
#
#
#=======================================
BSNT_00407___ 1 ------------------------ATGATTACGATAGGAAACTTCATTTG 26
.|.||||||.|.||||||||..|||
BL02540___pss 1 TTGAATAAATCAGTCATACCTTCTTTAATTACGGTTGGAAACTTTGTTT- 49
BSNT_00407___ 27 CGG--ATTGCTGGCGATTCATTCCTTGCTATATCACAACATTCATTCAGC 74
||| || |..||||.|.| |||| |.|||||||
BL02540___pss 50 CGGGCAT------CTCTTCAATAC-TGCT-----------TGCATTCAG- 80
BSNT_00407___ 75 AGTGCTTTTTATTTTTACAGGCA-------TGTTCCTTGAT--------- 108
|| |.|.||||||.|| ||.|| ||||| ||||
BL02540___pss 81 AG-GGTATTTATTCTT--AGCCATTATATTTGTTC--TGATCGGCGCTAT 125
BSNT_00407___ 109 -TT------CTTTGACGGGATGGCTGCTCGTAAGCTGAATG--------C 143
|| |.|||||||.|||||.||.||.|...|.|||| |
BL02540___pss 126 CTTGGACAGCCTTGACGGCATGGCCGCGCGCAGATTAAATGCCGTCAGCC 175
BSNT_00407___ 144 CGTTTCTGATATGGGGAGAGAACTGGATTCGTTTG-CCGATCTGGTTACG 192
||||| ||.|.||||.|.||||| |||| |.|||.|..|.||.
BL02540___pss 176 CGTTT--------GGAAAAGAATTAGATTC-TTTGTCTGATATTATCACT 216
BSNT_00407___ 193 TTTGGGGTGGCTCCTTCTATGCTTGCTTA--CAGTGTCGCGTTGTATACC 240
||.||.||.||.||..|.||..|..|.|| ||.| ||||.|.||..
BL02540___pss 217 TTCGGAGTCGCCCCGGCCATCATCACCTATTCAAT----CGTTTTTTATG 262
BSNT_00407___ 241 CTGCCATTTATCGGGATCTTATGC---------GCATTGACGTA----CA 277
.||| || .|||||||.|| .||||| .|| |.
BL02540___pss 263 ATGC------TC-CGATCTTAGGCCTTCCTTCGACATTG--TTATTCCCT 303
BSNT_00407___ 278 GCATTTGCGGAATGCTTCGCCTCTCTAAATTTAACATTGAA-CAAAGCAA 326
| ||||||||..||||||.||..|...||||||.|||.|| ||.||.|
BL02540___pss 304 G--TTTGCGGAGCGCTTCGGCTGGCGCGATTTAATATTCAATCAGAGAA- 350
BSNT_00407___ 327 GCTCCCGACGTTTATCGGT----ATGCCGATTCCGTT------TGCGGGC 366
|.|.|.|||| | |.||| |||||.| .||.||.
BL02540___pss 351 -----CCAGGATTAT---TTTACAGGCC--TTCCGATCACCGCAGCCGGA 390
BSNT_00407___ 367 ATGTGTCTCGTTAT--TTTAAGCT----TCA-----CCT-----ATAACC 400
|.|..||| |.||| ||.||.|| ||| ||| |.||.|
BL02540___pss 391 ACGATTCT-GGTATGCTTAAACCTTTTCTCAGAAATCCTGGGCAAAAAGC 439
BSNT_00407___ 401 CGATCCTTCTGGCAATCGGCACTTGCGG--ACTCTCATATTTGATGGTGA 448
||.||.||.|| || |.|||.| .||.||.|.|.|.|||||.|
BL02540___pss 440 CGTTCATTTTG---AT-----CATGCTGTTCCTGTCCTTTCTTATGGTCA 481
BSNT_00407___ 449 GTAAAATAAAATTCCCTCATTTT-------AAAAAAC-ATGCGGCAGAAA 490
|.|||||.|||.| |.|||...| ||||||| || .|.|||||
BL02540___pss 482 GCAAAATCAAAGT-CATCAGCCTGAAGGGGAAAAAACTAT--TGAAGAAA 528
BSNT_00407___ 491 ACCTGGAGTCTGGGAGATGGAATTAG 516
|.|||.|.|
BL02540___pss 529 -----------GTGAGCTAG------ 537
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