Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04643 and BL02539
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04643___yufM.1.5803.seq
# -bsequence dna-align/BL02539___malR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04643___yufM-BL02539___malR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04643___yufM-BL02539___malR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04643___yufM
# 2: BL02539___malR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 715
# Identity: 508/715 (71.0%)
# Similarity: 508/715 (71.0%)
# Gaps: 47/715 ( 6.6%)
# Score: 1788.5
#
#
#=======================================
BSNT_04643___ 1 ---------------------------------ATGGTGGGTGAATTAAA 17
|||||..|.||..|.||
BL02539___mal 1 ATGATTGATGTATTAATTGTTGAAGACGACCCGATGGTAAGAGAGCTGAA 50
BSNT_04643___ 18 TAAACGATACTTAAGCCAAATAGATGGCTTTCAGCTGAAAGGCATCGCTT 67
||||||.|||.|.||||||.||||.||.|||||||||||.|||||.||..
BL02539___mal 51 TAAACGTTACCTCAGCCAAGTAGAGGGATTTCAGCTGAAGGGCATTGCCG 100
BSNT_04643___ 68 CTTCCTTTCAA-AGCGCTCTGCATATT--TTAGGCGAGCACCATATCGAC 114
||||.|||||| || ||||| ||..|| |..|| ||..|.||||||||.
BL02539___mal 101 CTTCTTTTCAAGAG-GCTCT-CACCTTCCTCCGG-GAAGAGCATATCGAT 147
BSNT_04643___ 115 CTCATTTTGCTTGATATTTATATGCCGGGAAAAAACGGGCTGGAACTGCT 164
||.||..||||.||.|||||||||||.||.|..|||||..|.||||||||
BL02539___mal 148 CTGATCCTGCTCGACATTTATATGCCTGGCAGGAACGGCGTCGAACTGCT 197
BSNT_04643___ 165 GACGGAATTGAGAGCCCATAATGAAGCGGTTGACGTGATTGTCATCTCAG 214
.||.||..|.|||..|||.|||.||||.||.||||||||.||||||||||
BL02539___mal 198 CACTGAGATCAGACGCCAAAATCAAGCTGTCGACGTGATCGTCATCTCAG 247
BSNT_04643___ 215 CGGCCAGCGAGCTTGACG-TAATCAAGAAAACACTTCGGTACGGAGCTGT 263
|||||||.||..|.||.| |..|||| |||||.||.||||.|||.||.||
BL02539___mal 248 CGGCCAGTGAAATGGATGTTGTTCAA-AAAACGCTGCGGTTCGGGGCCGT 296
BSNT_04643___ 264 CGATTATTTAATCAAACCGTTTGAATTTGAACGTTTCCAAACGGCTTTGT 313
||||||.||||||||.|||||.||||||||.||.||.||||..||..|..
BL02539___mal 297 CGATTACTTAATCAAGCCGTTCGAATTTGAGCGGTTTCAAAGCGCGCTCA 346
BSNT_04643___ 314 CTGATTACAGACGAAAACAAAAGGTGTATTCAACCCATCGCAACATGAGC 363
|||||||||.|||.||.||..||.|.|||.|.|.|.|.||.||.||.|||
BL02539___mal 347 CTGATTACAAACGGAAGCAGCAGCTCTATGCTAGCAACCGGAATATCAGC 396
BSNT_04643___ 364 CAAAAAGAACTGGACGCCGAGCTTTTTCAAAAGAAAGAAGCAACAGAAAA 413
||||||||.|||||....||.|||||||||||.|||...||..|.|||||
BL02539___mal 397 CAAAAAGAGCTGGATTTTGAACTTTTTCAAAAAAAACGCGCGCCCGAAAA 446
BSNT_04643___ 414 AGTGCAGCTTCCTAAAGGCCTGACAAAAAGCACGCTGAAGCTGATCTGGT 463
.||.||..|.||.|||||.|||||.|||||||||||||||||.||.||||
BL02539___mal 447 GGTACATTTGCCAAAAGGGCTGACCAAAAGCACGCTGAAGCTCATTTGGT 496
BSNT_04643___ 464 CCAGTATCCAG-TCATTTGAAA--ATGAATCTTTTACGACAGAAGACTTG 510
|.||.|| ||| ||.|||||.| .||| |.||.||.||.|||||.|||
BL02539___mal 497 CAAGCAT-CAGATCGTTTGACAGCTTGA--CGTTCACAACGGAAGATTTG 543
BSNT_04643___ 511 GCAAAGCACACAGAAATCTCTCAAGTATCCATACGAAAATACTTAAAGTT 560
||.||.|||||.||||||||||||||.||.||.||.||||||||||||||
BL02539___mal 544 GCCAATCACACGGAAATCTCTCAAGTTTCAATCCGCAAATACTTAAAGTT 593
BSNT_04643___ 561 TCTTGAAGATGTACAAGTTCTGAATGTAGAAATGGCGTACGGAACGATCG 610
|||.||.||..|..|||||||.||.|||||||||||.|||||.|||||||
BL02539___mal 594 TCTGGAGGAAATCGAAGTTCTCAACGTAGAAATGGCCTACGGGACGATCG 643
BSNT_04643___ 611 GAAGACCTGTGTTTCAGTACAACGTCAACAACAGTAACCTTAACGGAATA 660
|.||.||.||.||.||.||.||..|.||.|..|.|.||.|.||.|..||.
BL02539___mal 644 GCAGGCCGGTTTTCCAATATAAATTAAATACAAATGACTTGAATGTGATT 693
BSNT_04643___ 661 AAGCAATATCTATAA 675
||.||||||||||||
BL02539___mal 694 AACCAATATCTATAA 708
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