Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04639 and BL02536
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04639___pbpD.1.5803.seq
# -bsequence dna-align/BL02536___pbpD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04639___pbpD-BL02536___pbpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04639___pbpD-BL02536___pbpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04639___pbpD
# 2: BL02536___pbpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1924
# Identity: 1390/1924 (72.2%)
# Similarity: 1390/1924 (72.2%)
# Gaps: 101/1924 ( 5.2%)
# Score: 4781.0
#
#
#=======================================
BSNT_04639___ 1 ------ATGTTACGAAAAATAATCGGATGGATTTTGCTCCTTTGCA---T 41
|.|||.||...|.|..|.||||||||||| ||..||| | |
BL02536___pbp 1 GTGACAAAGTTGCGTTCATTTTTTGGATGGATTTT--TCTGTTG-ATGTT 47
BSNT_04639___ 42 AATCCCATTGTTTGCATTTACAGTTATCGCTTCCGGAAAAGAAG-TAAAA 90
|||.||..|.||||..|||||..|.||.||.|||||....|||| |.|.|
BL02536___pbp 48 AATACCTATATTTGTCTTTACCTTAATGGCCTCCGGCCGGGAAGCTCAGA 97
BSNT_04639___ 91 CAAATGAAGTCCCTGGATCAGGTGCTTGATAAAAATATTAATCTGAAAGA 140
|.||||||.|.||.|||||||||||.|||.|.||.||.|||.|.||.||
BL02536___pbp 98 -ATATGAAGCCTCTCGATCAGGTGCTCGATGAGAAGATCAATATAAAGGA 146
BSNT_04639___ 141 TATCAGCCTTGTTCAGAACAGCTACATGTATGACAGGGACGGCTCCCTTG 190
||||.|||||||.||.|||||||||||||||||||||||||||.|.||..
BL02536___pbp 147 TATCGGCCTTGTACAAAACAGCTACATGTATGACAGGGACGGCGCTCTGA 196
BSNT_04639___ 191 TCTCGGAAATCG--TCAGCGACCACGAAAACCGTGTGCTCGTTCCATTTA 238
|.||.||||||| ||| ||.|||.|||||||.||..||||.||.|.||
BL02536___pbp 197 TTTCCGAAATCGTTTCA--GATCACCAAAACCGGGTATTCGTCCCCTATA 244
BSNT_04639___ 239 ACAACATTCCCGAGGAAGTCAAACAGAT-TTTCTTAACATCTGAGGACCG 287
|..|.||.||.||..|.||.||.|||.| |||| |.||.||.||||||||
BL02536___pbp 245 AAGATATCCCTGAACATGTGAAGCAGCTGTTTC-TGACTTCGGAGGACCG 293
BSNT_04639___ 288 CCATTT-TTACGAGCATAAAGGCTTTGACTTTATGGGAATGGTGCGGGCT 336
.||||| ||.| ||||||||||||||||.|||||.||.||||..|||||.
BL02536___pbp 294 TCATTTCTTTC-AGCATAAAGGCTTTGATTTTATCGGGATGGCCCGGGCC 342
BSNT_04639___ 337 ACTGCTTCTAACGTAAAAGACAAGAAA------ATTGACCAGGGTGCCAG 380
.|.||..|.||.|| |||.||| |||||.|||||.|||||
BL02536___pbp 343 GCCGCAGCCAATGT------CAAAAAAGGCGGCATTGATCAGGGGGCCAG 386
BSNT_04639___ 381 CACCATCACACAGCAGCTTTCAAGAAACTTATATTTGAGCCACGAACGCT 430
|||.||.||||||||||||||.||||||||.|||||||.|||.|||||..
BL02536___pbp 387 CACGATTACACAGCAGCTTTCGAGAAACTTGTATTTGAACCATGAACGAA 436
BSNT_04639___ 431 CCTTCAGCCGCAAGCTGACAGAGCTCGCGTATTCCTATCAGCTGGAGAAA 480
|||||..|||||||.|.||.||||||..|||||||||.||||||||.|||
BL02536___pbp 437 CCTTCGACCGCAAGTTCACTGAGCTCCTGTATTCCTACCAGCTGGAAAAA 486
BSNT_04639___ 481 AAATATACGAAAAATGAAATTCTTGAAGCTTACTTAAATACCATTTATTT 530
||...|.|.|||.|.||||||.||||....||||||||.|||||.|||||
BL02536___pbp 487 AAGCTTTCAAAAGAAGAAATTTTTGAGAAATACTTAAACACCATCTATTT 536
BSNT_04639___ 531 TAACAATGGTGTTTATGGCGTCGGTTCAGCAGCTCAATTCTATTTCAGCA 580
|||..|.||.||.||.||..|.||.||.||..||...|||||||||||||
BL02536___pbp 537 TAATCACGGGGTCTACGGAATTGGATCCGCGTCTTCTTTCTATTTCAGCA 586
BSNT_04639___ 581 AACCGCTGAAATCTCTCACAGTGGGAGAAATGGCTTTTATCTGTGCTATA 630
|.||..||||||||||||...|.|..||||.|||.|||||.||.||.||.
BL02536___pbp 587 AGCCTTTGAAATCTCTCAGCCTTGCCGAAACGGCGTTTATTTGCGCGATC 636
BSNT_04639___ 631 CCTAATAATCCTACATTATATGATCCTCTCAAGCATTTTGACTACACGAA 680
||||||||.||||||||||||||||||.|.||.||||||||||||||.||
BL02536___pbp 637 CCTAATAACCCTACATTATATGATCCTTTGAAACATTTTGACTACACAAA 686
BSNT_04639___ 681 AAGCCGTCAAGAACGTTTGCTTAAAGGGCTAAAAGATGCCGGGGTCATTA 730
||.|||.|||.|.||..|||||.|||||||.|||.|.||.||.||.||.|
BL02536___pbp 687 AACCCGCCAAAAGCGGCTGCTTGAAGGGCTGAAAAAAGCGGGCGTGATCA 736
BSNT_04639___ 731 CGGACAAAG-----AGCTGAAAAAAGCCGTAAAACAAAAAATCAAACTGG 775
|.||.|||| ||| ||||||||.||.||||||||.|..||..
BL02536___pbp 737 CCGAAAAAGAATACAGC-----AAAGCCGTTAAGCAAAAAATTACGCTTA 781
BSNT_04639___ 776 ATGTTGAA--AAAAGAGAAGACAAATATCCTGAC--TACGTTTCCTACGT 821
|.| |||| |||||| |||||.|.|||||.||| |||| .||||.||
BL02536___pbp 782 ACG-TGAAAGAAAAGA-AAGACGACTATCCCGACTATACG--ACCTATGT 827
BSNT_04639___ 822 CAATGATGAATTCACTCAGCTGGTGTCTGAATCAGAAGGCTTTGATAAAC 871
|||.||.||||||||..|..|||||||.|...|.|||||.|||||..|||
BL02536___pbp 828 CAACGAGGAATTCACCAAATTGGTGTCCGCTACGGAAGGGTTTGACGAAC 877
BSNT_04639___ 872 GCCTTCAAAAAGCATCAGGAAAACAAA--AAGAAAAG------ATCGAAA 913
|.||..||||.||| |||||||| |||||||| |||||||
BL02536___pbp 878 GGCTGAAAAAGGCA-----AAAACAAAAGAAGAAAAGAAAAAAATCGAAA 922
BSNT_04639___ 914 ACGAGCTGTCCGCAA---GAGTCAGCACGCTGATGA-AAGACGGCGTGAA 959
|.||||||| ||| ||.|||||.|.||.|.|| ||| |||..|.||
BL02536___pbp 923 AAGAGCTGT---CAAACCGAATCAGCTCCCTCACGACAAG-CGGAATCAA 968
BSNT_04639___ 960 AATTTATACTGCACTTGATCCGTACATGCAAAATCAAGTTGTGGCA-CAA 1008
|||||||||.||.||.|||.|...|||||||||.|..||.|| .|| |||
BL02536___pbp 969 AATTTATACGGCGCTCGATACCAGCATGCAAAACCGTGTCGT-CCAGCAA 1017
BSNT_04639___ 1009 ATGAATTCCAAGCTCCCGTATGCGGACGTACAGGGCGGAGCGGCTGTGAT 1058
.||||...|...|||||.||||..|.||||||.||||||||.|..|||||
BL02536___pbp 1018 GTGAAGAACCGCCTCCCTTATGAAGGCGTACAAGGCGGAGCAGTGGTGAT 1067
BSNT_04639___ 1059 TAATCACCAGACGCATCAAATCATCGCTCTATCCGGCGGGAAAAACTATC 1108
.||.|||||.||.|||||||||.||||..|.||||||||||||||||||.
BL02536___pbp 1068 CAACCACCAAACCCATCAAATCGTCGCCATGTCCGGCGGGAAAAACTATA 1117
BSNT_04639___ 1109 AAAAATATGACTTTAACCGCGCCTACCAGGCGTACAGGCAGCCGGGTTCA 1158
||||.||.||.|.|||||..||.|.|||.||.||||||||||||||.|||
BL02536___pbp 1118 AAAAGTACGATTATAACCTGGCATTCCAAGCATACAGGCAGCCGGGGTCA 1167
BSNT_04639___ 1159 TCCATTAAGCCGCTTCTTGATTACGGCCCTTATATTGAACAGACCGGCGC 1208
||.|||||||||||.|||||.|||||.||.||.||||||.|.||.||.||
BL02536___pbp 1168 TCAATTAAGCCGCTCCTTGACTACGGGCCGTACATTGAAGAAACGGGTGC 1217
BSNT_04639___ 1209 GACAGCAAGCAGCACAATTGATGCCAGCAAGTTTTGCAGCAAAGACTACT 1258
|||.|||.||||||..|||||.||.|||||.|||||||||||.||.||||
BL02536___pbp 1218 GACGGCAGGCAGCATGATTGACGCAAGCAAATTTTGCAGCAAGGAATACT 1267
BSNT_04639___ 1259 GTCCGCAAAACTACAATAACCGCACTTACGGCACAGTGACGCTTGATACG 1308
|||||.|.||||.|||..|..|.||.|||||.||.|||.||.|..|.||.
BL02536___pbp 1268 GTCCGAACAACTTCAACGAAAGAACATACGGAACCGTGTCGATCAAGACA 1317
BSNT_04639___ 1309 GCGTTTAAAAATTCATATAATACCCCGGCTATTAGAATGCTCGACCGCGT 1358
||.||||||.||||.||||||||.||.||..|..|.|||||..||||.||
BL02536___pbp 1318 GCCTTTAAATATTCGTATAATACACCAGCCGTACGTATGCTGAACCGGGT 1367
BSNT_04639___ 1359 CGGCATCCAAAAGGCATTCAGTTATATTGAGCCGTATC--ATTTTGCCAA 1406
||||.|.|||||.|.||||||.|||.|..|.|||| || | ||.|..||
BL02536___pbp 1368 CGGCGTGCAAAAAGGATTCAGCTATTTAAAACCGT-TCGGA-TTCGATAA 1415
BSNT_04639___ 1407 ACTTGTCGACAGTGACTATCTTCTTCCGGCGGCGCTTGGCGGATTTACAA 1456
|.|.||..|.|..|||||.|.||||||.||.|||||.||||||||||||.
BL02536___pbp 1416 AATCGTTCAAAACGACTACCGTCTTCCTGCTGCGCTGGGCGGATTTACAT 1465
BSNT_04639___ 1457 ACGGCATGACGCCTCTTGAGATGACAAAGGCTTATACGACATTCGGCAAC 1506
..|||.|..|.||.||.||||||.|..|.||.||||||||.||||||||.
BL02536___pbp 1466 GGGGCTTCTCACCGCTGGAGATGGCTGATGCCTATACGACCTTCGGCAAT 1515
BSNT_04639___ 1507 AGCGGAAGCTATACGCCGAGCCATGCGATTACAAAGGTGACAGACCTAAA 1556
|.|||||||||.||..|.||||||||.||.|||||||||||.||..||||
BL02536___pbp 1516 AACGGAAGCTACACATCCAGCCATGCAATCACAAAGGTGACGGATTTAAA 1565
BSNT_04639___ 1557 AGGAAAAACGCTTTATAAATGGAATGATAAAGCGACTCAAATATTCAGCG 1606
||||||||||||.||.||||||||.||.||..||...|||.||||||||.
BL02536___pbp 1566 AGGAAAAACGCTATACAAATGGAAAGACAAGCCGCAGCAAGTATTCAGCA 1615
BSNT_04639___ 1607 TCCGCACGAACATGCAGCTGAAAAAACTGATGTCGTCCGTTGTGAAAAGC 1656
|.||.||.||||..||..||....||||..|..|..|.|||||.|||...
BL02536___pbp 1616 TGCGGACAAACAGCCAAATGCGCGAACTCTTAGCAGCGGTTGTTAAAGAA 1665
BSNT_04639___ 1657 GGAACAGGGAAAAAAGCATATTTCAATGCGCC--TTACATCGGCGGTAAA 1704
|||||.||.||||||||..|||||| |||.| .||..|.||.||.|||
BL02536___pbp 1666 GGAACCGGAAAAAAAGCGAATTTCA--GCGGCGGATATGTAGGAGGAAAA 1713
BSNT_04639___ 1705 ACCGGAACATCAAATGATTATCACGATA--TGTGGTTTGTCGGCCTGACT 1752
|||||||||||.||.|..|| || ||.| |.|||||||||||..||||.
BL02536___pbp 1714 ACCGGAACATCCAACGGGTA-CA-GAGACCTTTGGTTTGTCGGATTGACG 1761
BSNT_04639___ 1753 GATACGTATACAATGGGTGTCTGGGTCGGAAAGGA--CACACCGACCAGC 1800
|||||.||.||||||.||||.|||||||||||.|| ||.|..| ||..
BL02536___pbp 1762 GATACATACACAATGAGTGTATGGGTCGGAAAAGAGGCAAAAGG--CACT 1809
BSNT_04639___ 1801 GTTGAATATCTTCACAGCATCA-----GCCCTCAGCTTTCCATCTGGAAA 1845
||.||.||.|| |||||| |.|||||.||||..|||||||.|
BL02536___pbp 1810 GTCGAGTACCT-----GCATCACGCGGGACCTCAACTTTTAATCTGGAGA 1854
BSNT_04639___ 1846 GGAACGCTGCAAGCGGCTTATTAA 1869
||||||||||||...||.|.||||
BL02536___pbp 1855 GGAACGCTGCAATACGCATCTTAA 1878
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