Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04635 and BL02533
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:46
# Commandline: needle
# -asequence dna-align/BSNT_04635___kapB.1.5803.seq
# -bsequence dna-align/BL02533___kapB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04635___kapB-BL02533___kapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04635___kapB-BL02533___kapB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04635___kapB
# 2: BL02533___kapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 427
# Identity: 269/427 (63.0%)
# Similarity: 269/427 (63.0%)
# Gaps: 77/427 (18.0%)
# Score: 811.5
#
#
#=======================================
BSNT_04635___ 1 ATGA----------GCACGTTTGAGACAGGCTCTATCGTTAAAGGATTTT 40
.||| .||.||..|||| |..|||.||.||.||||
BL02533___kap 1 GTGAACAACCAATTTCAAGTCGGAGA-------TCGCGTAAAGGGCTTTT 43
BSNT_04635___ 41 ACAAAACAGGTGTATACATAGGAGAAATCACGGCTTGCAGGCTGCAGCAT 90
|.||||||||.||.|||||.||.|||||.||||.|...|..|.|..|||.
BL02533___kap 44 ATAAAACAGGCGTCTACATCGGCGAAATTACGGATGTTAAACCGATGCAC 93
BSNT_04635___ 91 TATTTAGTGAAAGTGAAAGCGGTTCTTACCCATCCCGCTCAGGGAGACCT 140
||..|.||.|||.|....||.||.||.||||||||....|||||.|||||
BL02533___kap 94 TACCTGGTCAAAATCCTCGCCGTGCTGACCCATCCGAAGCAGGGCGACCT 143
BSNT_04635___ 141 TCATCATCCAAAACAGGCGGATGTGCCATTTTTCCATGAGAGAAAAGCGC 190
|||||||||.||.|.|||.||.||.||.|||||.|||||..|||||||||
BL02533___kap 144 TCATCATCCCAATCGGGCAGACGTCCCTTTTTTTCATGAACGAAAAGCGC 193
BSNT_04635___ 191 TCGCATATGGTGAACAGACCAATATCCCCCACCATATGGTGAAGCC-TTA 239
||||.||.|||||||||||.||||||||.||||..||||||||||| ||
BL02533___kap 194 TCGCTTACGGTGAACAGACGAATATCCCGCACCGCATGGTGAAGCCGTT- 242
BSNT_04635___ 240 TGACGGTGAA---GTGCCGGATTATACCGAATCTCTGCGGGAGGCGACAG 286
||.|||| ||.|||||||||.|.||.||.|| |.|
BL02533___kap 243 ---CGATGAAGCTGTACCGGATTATGCGGATTCGCT-----------CCG 278
BSNT_04635___ 287 CACAGCTGAGAGCC----AAATTGAATGAGGAT---------GGTTCG-- 321
|.|||||..||||| ||| || .|||| |.||||
BL02533___kap 279 CTCAGCTTTGAGCCGCTTAAA---AA--CGGATCTGCAAAACGATTCGTC 323
BSNT_04635___ 322 -GAGT---GGGCAAAGCGCTCCCTT---CATAATC-TGGACATTTTAGAA 363
||.| .|||||| .||.||| |.||.|| |||.| |.|||
BL02533___kap 324 CGAATACGCGGCAAA---ATCGCTTGAGCTTATTCATGGGC----TTGAA 366
BSNT_04635___ 364 AAAGAATATTTTAACCAGC---CATAA 387
||||||||||| ||.|| .||||
BL02533___kap 367 AAAGAATATTT---CCTGCACAAATAA 390
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