Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04568 and BL02518

See Amino acid alignment / Visit BSNT_04568 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_04568___yuaC.1.5803.seq
#    -bsequence dna-align/BL02518___yuaC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04568___yuaC-BL02518___yuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04568___yuaC-BL02518___yuaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04568___yuaC
# 2: BL02518___yuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 583
# Identity:     411/583 (70.5%)
# Similarity:   411/583 (70.5%)
# Gaps:          68/583 (11.7%)
# Score: 1377.0
# 
#
#=======================================

BSNT_04568___      1 ATGGATGAAAATCC---AGAATTTGCAGCTATAGA---------ACAGGC     38
                     |||   ||.|||||   .||..||.||||.|.|||         ||||||
BL02518___yua      1 ATG---GACAATCCCCGTGATGTTTCAGCAAAAGAAACGATCGCACAGGC     47

BSNT_04568___     39 TCGGGATCTTGTTATTGACTCCATTGCTGAAACGATGGATCTTTACGGAA     88
                     ....||||||||.|||||.||.||.||.|||||.||||||||.|||||.|
BL02518___yua     48 AAAAGATCTTGTCATTGATTCAATCGCAGAAACAATGGATCTGTACGGCA     97

BSNT_04568___     89 TTACCCGCAGTGTCGGG-ATTTTATATGGGACGATGTATATGAGGGATGA    137
                     |||||||.|||| |||| |||||.||.||.||||||||..|...||||||
BL02518___yua     98 TTACCCGGAGTG-CGGGCATTTTGTACGGAACGATGTACCTTTCGGATGA    146

BSNT_04568___    138 GATGACGCTTGACGAAATGCGTGAGGAGTTGCAAATGAGCAAACCAAGCA    187
                     .||||||||.|||||||||||.||.||..|||||||||||||.||.||||
BL02518___yua    147 AATGACGCTGGACGAAATGCGGGAAGAACTGCAAATGAGCAAGCCCAGCA    196

BSNT_04568___    188 TGAGCACAGGCGTCAAAAAGCTTCAAGACTTAAATGTAGTGAAAAAAACA    237
                     ||||||||.||||.||||||||.|||||||||||.||.||.|||||.|||
BL02518___yua    197 TGAGCACAAGCGTAAAAAAGCTCCAAGACTTAAACGTCGTCAAAAAGACA    246

BSNT_04568___    238 TTTCACCGGGGCATCCGTAAGCATACA----TTTGTGGCTGAGAAGGATT    283
                     ||.|||.|.||.|    .|||.|.|||    |||||.|||||.|||||||
BL02518___yua    247 TTCCACAGAGGAA----GAAGAAAACACAGCTTTGTTGCTGAAAAGGATT    292

BSNT_04568___    284 TCTTTAAATTTTTCACAAATTTCTTTCCACCT---AAATGGGAGCGGGAG    330
                     ||||.|||||||||||||..|| ||||  |||   ||||||||..||||.
BL02518___yua    293 TCTTCAAATTTTTCACAAGCTT-TTTC--CCTAAAAAATGGGAAAGGGAA    339

BSNT_04568___    331 GTTCAAGTGAATGTAGCA--GCGATCGAGGAAGCTC---AAGCTGATT--    373
                     ||..||||||||.|  ||  ||.||..|.||.||||   ||||  |||  
BL02518___yua    340 GTCAAAGTGAATCT--CATGGCTATTCAAGACGCTCAAAAAGC--ATTGG    385

BSNT_04568___    374 --TACAAAAGGTTTTAT-GCAAG-GAAGATCTCGATG--AGGATATCAAA    417
                       .|||       |.|| |.||| ||||..||.||.|  ||.|||  |||
BL02518___yua    386 AGGACA-------TCATCGAAAGCGAAGGGCTTGACGAAAGCATA--AAA    426

BSNT_04568___    418 AATGAAGC----ACTGCAGTTATATGATCAGCTGGAAAGCTCTAAAGCTT    463
                     .|.|||||    |||    .|.|||||.|||||.|||...||.|||.|.|
BL02518___yua    427 GAGGAAGCGAGAACT----CTTTATGACCAGCTTGAACATTCAAAACCGT    472

BSNT_04568___    464 ACTATGACTGGCTGAAACGGCTTGCTGAATCGGTGCAGACCGGAGAAATT    513
                     |.||||||||||||....|.||.|||.||||.||.||..|.|||||.|||
BL02518___yua    473 ATTATGACTGGCTGCTGAGACTCGCTAAATCTGTCCAATCGGGAGAGATT    522

BSNT_04568___    514 TTTAAATTTATACCGATCGA-AACA--AAGTAA    543
                     |||.|.|||||||||||.|| ||||  ||.|||
BL02518___yua    523 TTTGAGTTTATACCGATTGATAACAAGAAATAA    555


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