Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00059 and BL02508
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_00059___yaaO.1.5803.seq
# -bsequence dna-align/BL02508___yaaO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00059___yaaO-BL02508___yaaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00059___yaaO-BL02508___yaaO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00059___yaaO
# 2: BL02508___yaaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1563
# Identity: 990/1563 (63.3%)
# Similarity: 990/1563 (63.3%)
# Gaps: 240/1563 (15.4%)
# Score: 2899.5
#
#
#=======================================
BSNT_00059___ 1 ATGAACACACCTTTATATAAAGCATTAATTCAACATGC-GAGAAGAAATT 49
|||||.|||||||||||||.||||||..|..|.||||| || |.||.||.
BL02508___yaa 1 ATGAAGACACCTTTATATACAGCATTGGTGAACCATGCTGA-AGGACATC 49
BSNT_00059___ 50 CTCATTCATTTCATGTTCCGGGACATCACAATGGAGATGTCTTTTTTGAT 99
.|.||||.|||||.||||||||||||||||||||||||||||||||||||
BL02508___yaa 50 ATTATTCTTTTCACGTTCCGGGACATCACAATGGAGATGTCTTTTTTGAT 99
BSNT_00059___ 100 GACGCTAAGTCAATATTCGATCCGCTTCTCACCATTGATGTAACTGAACT 149
||.||.||..|..|.||.||..||.||||||...|.|||.||||||||||
BL02508___yaa 100 GAAGCAAAAACTTTTTTTGAAACGATTCTCAAAGTGGATCTAACTGAACT 149
BSNT_00059___ 150 GGCAGGATTGGATGATCTCCATCATCCTTCCGGGGTGATTAAGGAAGCTC 199
|.|||||.||||||||.|.|||.|.||.||.||.||.||.||||||||.|
BL02508___yaa 150 GACAGGACTGGATGATTTACATGAGCCATCTGGCGTCATCAAGGAAGCAC 199
BSNT_00059___ 200 AGGA------------GCTTGTCAGTCAATTATATGGATCGGCGGAAAGT 237
|||| |||| ||.|||.|||..|||||.
BL02508___yaa 200 AGGATTTAGTTTCGCGGCTT------------TACGGAGCGGAAGAAAGC 237
BSNT_00059___ 238 TTTTTTCTGGTAAATGGTACGACTGTCGGAAACTTAGCGATGATTTTATC 287
||||||||.||.||||||.||||.||.||.||..|.||.|||||..|..|
BL02508___yaa 238 TTTTTTCTCGTCAATGGTTCGACCGTTGGGAATCTGGCTATGATCCTGGC 287
BSNT_00059___ 288 TGTTTGTGAACCTGGTGATACAATTCTGGTTCAAAGAAACTGTCATAAAT 337
|||||||.|.||.||||||||.||.||.|||||..|.|||||.|||||.|
BL02508___yaa 288 TGTTTGTCAGCCGGGTGATACGATACTCGTTCAGCGTAACTGCCATAAGT 337
BSNT_00059___ 338 CTGTATTTCATGCTGTTGA--TTTGGCCGGTGCTAAGCCGGTTTATCTTG 385
|||||||||||||..|||| ||| |.||.||..|.||||||| |.|||
BL02508___yaa 338 CTGTATTTCATGCGATTGAACTTT--CAGGCGCCCATCCGGTTT-TTTTG 384
BSNT_00059___ 386 -CACCTGACGTTGATTCAGCGATGCATGTGCCTACGCATGTTCCGCTTGG 434
||||.||..|||||...||||||..|||.||.||.|||.|.|.|...|.
BL02508___yaa 385 ACACCGGAAATTGATGAGGCGATGGCTGTTCCCACACATATACTGTACGA 434
BSNT_00059___ 435 AACAATTAAAGAGGCCCTGGAAGCATATCCAGATGCGAAAGGCTTGGTAC 484
||||.||.||||.||..|...|..||||||..|.||.|||||..|.||..
BL02508___yaa 435 AACAGTTGAAGATGCAATTTCACAATATCCGCACGCAAAAGGGATCGTGT 484
BSNT_00059___ 485 TGACCAATCCGACATATTACGGACAT--AGTGCTGATTTGACTGA----G 528
||||..||||.|..||.|||||.||| ||| |||| |||| |
BL02508___yaa 485 TGACATATCCAAATTACTACGGCCATGCAGT--TGAT----CTGAAGCCG 528
BSNT_00059___ 529 ATCATTACTGAA---GCCCATCATTACGGGATTCCTGTTTTGGTCGATGA 575
||||| .||| |||||.||..|||..|||.|.|||||.|||||.||
BL02508___yaa 529 ATCAT---AGAAAAGGCCCACCAACACGATATTTCCGTTTTAGTCGACGA 575
BSNT_00059___ 576 AGCGCATGGCGCACATTTTATTTTAGGTGAGCCTTTTCCGGTCTCAG--- 622
.||.||.|||||.||||||.|..|.||..|.||.|||| |.|||
BL02508___yaa 576 GGCTCACGGCGCCCATTTTGTGCTGGGCCATCCATTTC----CCCAGTCG 621
BSNT_00059___ 623 -CTTTAAAAATGGGGGCAGATATTGTTGTTCAGTCGGCCCACAAAACGTT 671
|.||.|||..|||.||.|||...||.||.|||||.||.||.||||||.|
BL02508___yaa 622 TCGTTGAAAGCGGGCGCTGATGCCGTCGTCCAGTCCGCGCATAAAACGCT 671
BSNT_00059___ 672 GCCTGCCATGACGATGGGTTCTTATTTGCATCTTAACAGCAGCTGCAGGA 721
.||.||.|||||||||||.||.|||.|||||||||| ||||.||||||
BL02508___yaa 672 CCCGGCGATGACGATGGGGTCCTATCTGCATCTTAA---CAGCGGCAGGA 718
BSNT_00059___ 722 TTAACAGGGATCGGGTGGCAGAGTATTTAAACCGAT--TACAAAGCAGCA 769
|.||||||||..|..|||||.|.|||.| ..||| | |.||||||||||
BL02508___yaa 719 TCAACAGGGACAGACTGGCATACTATCT-GTCCG-TGCTTCAAAGCAGCA 766
BSNT_00059___ 770 GCCCGTCTTATCCGATAATGGCTTCGTTAGATATTGCCCGCGCTTATGTA 819
|.||.||.||.||.||.|||||.||.||.|||||.||..|.||.||.|
BL02508___yaa 767 GTCCTTCCTACCCAATTATGGCATCTTTGGATATAGCTAGGGCATACG-- 814
BSNT_00059___ 820 CAGCATAT-TATAGAAGAACAAAAGCTTTCTGACATTCTGCAGCGGAT-- 866
|.|.|.|| |.|.||| |||||| ||..| ||||.|||
BL02508___yaa 815 CCGAAGATATCTTGAA-AACAAA-----TCGAA-------CAGCCGATAT 851
BSNT_00059___ 867 --ACAAACACTTAAACAAACGTTTGA--------TTCACTTACAAATGCA 906
|.|||.|..|.|.||| |.||| ||..|| |||||..|
BL02508___yaa 852 TGAGAAAGAGCTCATCAA---TATGAGAGAAGTCTTTTCT--CAAATAAA 896
BSNT_00059___ 907 -GAAGCTGTTA------ACCCTGCTAATCCACTGATCATCACG----GAC 945
|.|||||.|| |.||.|||.||.|.|..||| || ||.
BL02508___yaa 897 CGGAGCTGATATTGTCGAGCCGGCTGATGCCCGTATC----CGGCAAGAT 942
BSNT_00059___ 946 CCGCTGAAGCTCACAATTCGTTCAAAACG--CGGGCATTCTGGCTATACG 993
|||||.|||||....||..|.|| |.|| |||.||.||.||.|.|...
BL02508___yaa 943 CCGCTTAAGCTGTGTATCAGATC--AGCGTACGGCCACTCCGGTTTTGAA 990
BSNT_00059___ 994 CTGCAAAGCATATTAGAGCGTGCCAAC-ATATTCA--CTGAGCTTGCTGA 1040
|||.||..||||||.|| .||.||| ..||.|| ||||..|.||.||
BL02508___yaa 991 CTGAAATCCATATTTGA---AGCAAACGGCATCCATCCTGAATTGGCAGA 1037
BSNT_00059___ 1041 TGAAAATCAAGTTCTGCTCGTTCTCCCATTGGGGGGAAAACGGAGAATAA 1090
|||||..|||||.|||.|..|.||.||..|.|..|||||| |||
BL02508___yaa 1038 TGAAAGGCAAGTCCTGTTGATCCTGCCGCTTGAAGGAAAA-----AAT-- 1080
BSNT_00059___ 1091 ATG-------CTGAA---ACCATTAGAAGCATTGATGA----AAAGATTG 1126
||| |.||| |.||..|.||.||.|.|.|| ||||||..
BL02508___yaa 1081 ATGCCCGCGCCGGAACTGATCAGCACAATCAGTAAAGACATGAAAGATAC 1130
BSNT_00059___ 1127 AG------AAAACG-----CCT-CCGG-ATCAGG-----CGTTTGTTTCT 1158
|| .|||.| ||| |||| ||| || | ||||
BL02508___yaa 1131 AGCAGTTCGAAATGATCTTCCTGCCGGAATC-GGAATCCC------TTCT 1173
BSNT_00059___ 1159 GCAGAATGGGGAGTGCAGCCTGTTACTGTCTTGCCTTATCCAAAAAAG-- 1206
|.|.|| ||.||.|..|||||||| ||..|||||
BL02508___yaa 1174 GAAAAA---------------GTCACGGCTTTGCCTTA-CCGGAAAAGCA 1207
BSNT_00059___ 1207 ----GTCTTACATTCGTTTAAGAAAGAATATGTGGACTTTGA-GGAAGCA 1251
||| |.|.||.||.|||||||..|| |.||||.| .||||||
BL02508___yaa 1208 AGTTGTC-----TGCCTTCAAAAAAGAATCGGT-GCCTTTTACCGAAGCA 1251
BSNT_00059___ 1252 ACTGGCCGGCTGAAT----GCAGAAGATATCATCCCTTATCCTCCGGGTA 1297
||.|||.|||| ||.|||....|||..||||||||||||||.|
BL02508___yaa 1252 ----GCGGGCAGAATAAGCGCCGAATCGGTCACACCTTATCCTCCGGGCA 1297
BSNT_00059___ 1298 TCCCGATGATTATGGCGGGAGAAAGAATAACAAAAGAAAGTGTGCAAAAG 1347
|.|||.||||.||||||||.||.||||||||||||| |.|.|
BL02508___yaa 1298 TTCCGTTGATCATGGCGGGTGAGAGAATAACAAAAG---------AGACG 1338
BSNT_00059___ 1348 CTCAGCCG-------------CTTGATCAGCATGAAAACGCATGTTCAAG 1384
.||||||| .|.||||.|.|||.| ||..||||.|
BL02508___yaa 1339 ATCAGCCGGCTGACGCGGCTCGTCGATCTGAATGTA----CACATTCAGG 1384
BSNT_00059___ 1385 GGAATATGAAA----ATCAAAGAGAAACAACTACTTGTTTATATAGAAGA 1430
|.| |.|| .|||||.|.||.|||.||..|||.|||||||||||
BL02508___yaa 1385 GCA----GCAATCAGCTCAAACAAAAGCAATTAACTGTATATATAGAAGA 1430
BSNT_00059___ 1431 GGAGAAATCATGA 1443
|||||||||||||
BL02508___yaa 1431 GGAGAAATCATGA 1443
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