Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_05559 and BL02499

See Amino acid alignment / Visit BSNT_05559 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:41
# Commandline: needle
#    -asequence dna-align/BSNT_05559___flhO.1.5803.seq
#    -bsequence dna-align/BL02499___flhO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05559___flhO-BL02499___flhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05559___flhO-BL02499___flhO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05559___flhO
# 2: BL02499___flhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     588/862 (68.2%)
# Similarity:   588/862 (68.2%)
# Gaps:          71/862 ( 8.2%)
# Score: 1883.5
# 
#
#=======================================

BSNT_05559___      1 TTGTTAAAAGGATTATATACAGCAACATCCGCAATGATTGCCCAGCAGCG     50
                     .|||||||||||.|.|||||||||||.||.||||||||..||||||||||
BL02499___flh      1 ATGTTAAAAGGACTTTATACAGCAACTTCAGCAATGATCACCCAGCAGCG     50

BSNT_05559___     51 AAGAACGGAAATGCTTTCAAATAATATTGCTAACGCAAATACATCAGGAT    100
                     ..|.||.||.|||||..|.||||||||.||.||.||||||||..|.||||
BL02499___flh     51 CCGCACAGAGATGCTGACGAATAATATCGCGAATGCAAATACGCCGGGAT    100

BSNT_05559___    101 ATAAAGCTGATCAAGGCTCGATGCGCGCGTTCCCTGAAATGCTGCTCAGC    150
                     ||||||..||.|||||.||.||.||..|.|||||.||||||||..|.|||
BL02499___flh    101 ATAAAGAAGACCAAGGATCAATACGTTCTTTCCCGGAAATGCTTTTGAGC    150

BSNT_05559___    151 AGAATAGAATCAAAATCT-------CCGGCCGGGACATCGAG--------    185
                     .|.||.||.||..|.|||       |||||.|.| |.|||.|        
BL02499___flh    151 CGGATTGAGTCTGATTCTTTCAAAGCCGGCAGCG-CTTCGCGTTCGTTTT    199

BSNT_05559___    186 -------GACGGAAATCGGTTCCGTGAATACCGGAGTATATATGCAGGAG    228
                            ||||..|||||||||..|.|||||.||.||.|||||||||||.
BL02499___flh    200 CAACACAGACGCCAATCGGTTCAATCAATACAGGGGTTTATATGCAGGAA    249

BSNT_05559___    229 CTTAAGCCTCTCTTTACACAGGGAAGCCTG--AAGTCCACAGACCAGCCT    276
                     ||.|||||||..|||.|.||.||....|||  |||  |||..|..||||.
BL02499___flh    250 CTGAAGCCTCAATTTTCTCAAGGCGATCTGCAAAG--CACGAATGAGCCG    297

BSNT_05559___    277 ATAGACATTGCATTGATCGAAAATCAAGTTCCGATGAATGCGGAAACCAA    326
                     |.|||.||||||.|.|.||||....||||||||.|.||.|..|||||.||
BL02499___flh    298 ACAGATATTGCAATCAGCGAAGCCGAAGTTCCGGTCAACGGCGAAACAAA    347

BSNT_05559___    327 TGAAAACGCGGCTCTTTTTTA-----TCCGG-TTCAAACAGCGGATGGAA    370
                     .||.||.|||||.|||||.||     ||||| ||.|||..|.|||||   
BL02499___flh    348 CGATAAAGCGGCGCTTTTCTACGCGGTCCGGCTTGAAAATGGGGATG---    394

BSNT_05559___    371 TCCGTTACTCAAAAAGCAGCACATTTTCATTAAATGAGAACAATCAACTG    420
                     |.||.||.||||.|||||||...|||||.||||||||.||.||||||.||
BL02499___flh    395 TACGCTATTCAAGAAGCAGCCGTTTTTCTTTAAATGAAAATAATCAATTG    444

BSNT_05559___    421 ACGATCAACGGACGCCCTGTTTTATCGACGGATCGCCAGCCAATCACTGT    470
                     ||.||.|||||.||.|..||..|.||.|||||...||.|||.|||||.||
BL02499___flh    445 ACAATAAACGGCCGACTCGTCCTTTCAACGGAAAACCGGCCGATCACGGT    494

BSNT_05559___    471 TGATAATGAGAA-TTTCACTGTGTCTGAAAACGGTACTGTGAC--AACGA    517
                     .|..|..||||| ||||| .||..||||..||||.||.|||||  ||  |
BL02499___flh    495 GGGAAGCGAGAATTTTCA-AGTCGCTGAGGACGGAACGGTGACTGAA--A    541

BSNT_05559___    518 ACGGACGGACAGCCGGCCA-GATTGATGTCAGAATGGCG---GA----AG    559
                     |||| |..|.|.|.||..| |||.|||||||||||.|||   ||    ||
BL02499___flh    542 ACGG-CCAAAATCTGGGGAGGATCGATGTCAGAATCGCGCTCGATACGAG    590

BSNT_05559___    560 ATGTCCGCAATCT--CAAACGGGACGGAAATGATTTGTACAGCACGGCGG    607
                     |       |||.|  |||  |.||.||..|||||.||||..|.||.|...
BL02499___flh    591 A-------AATTTAGCAA--GAGAAGGCGATGATCTGTATCGTACTGAAA    631

BSNT_05559___    608 ACGGTAATGATCTGCCAAGCGCAGCCGGAAACAATC---AGGTATCTTAT    654
                     |||||.|.|..|||||||||||||.|||   |||||   |.||..|||||
BL02499___flh    632 ACGGTGAGGCGCTGCCAAGCGCAGTCGG---CAATCCTGAAGTCACTTAT    678

BSNT_05559___    655 TCATTAAAACAAGGCGTCTCAGAGCTTTCAAACGTGGATGTGACAAGCGC    704
                     ||..|.||.||.||..|..|.||.|..||.||.||.||.|||||.||.||
BL02499___flh    679 TCTGTCAAGCAGGGGATGACCGAACGGTCGAATGTCGACGTGACGAGAGC    728

BSNT_05559___    705 CTATACAGAAATGACTGAAGCGTACAGATCGTTTGAGGCCAATCAGAAGG    754
                     ||||||.||||||||.|..||.|||.|.||||||||.|||||.||.||.|
BL02499___flh    729 CTATACGGAAATGACCGCTGCCTACCGCTCGTTTGAAGCCAACCAAAAAG    778

BSNT_05559___    755 TTATTCAGGCTTACGATAAAAGTATGGATAAAGCAGCAAATGAGATCGGA    804
                     ||.||||||||||.||||||||.|||||.||.||.||.||||||||.|||
BL02499___flh    779 TTCTTCAGGCTTATGATAAAAGCATGGAAAAGGCGGCCAATGAGATTGGA    828

BSNT_05559___    805 AAAAT---TTAA    813
                     |..||   .|||
BL02499___flh    829 AGGATCGGATAA    840


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05559 and BL02499

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
