Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05553 and BL02495
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05553.1.5803.seq
# -bsequence dna-align/BL02495___mscL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05553-BL02495___mscL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05553-BL02495___mscL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05553
# 2: BL02495___mscL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 480
# Identity: 272/480 (56.7%)
# Similarity: 272/480 (56.7%)
# Gaps: 111/480 (23.1%)
# Score: 870.0
#
#
#=======================================
BSNT_05553 1 TTGAAAAAAGGCAAATGGCCAGCGGCACATTTGTCTTTTTTTCTTTACAA 50
BL02495___msc 0 -------------------------------------------------- 0
BSNT_05553 51 ATATAGAAAAGCAGGTGATTGTATGTGGAATGAATTTAAAGCCTTTGCCA 100
||||||||.|||||||||...|||||.|
BL02495___msc 1 ----------------------ATGTGGAAAGAATTTAAAAGTTTTGCGA 28
BSNT_05553 101 TGCGGGGGAATATCGTAGACCTTGCGATTGGTGTTGTGATAGGCGGCGCT 150
|.|||||.|||.|..|.||.|||||.||||||||..|.||.||.|||||.
BL02495___msc 29 TTCGGGGAAATGTAATCGATCTTGCAATTGGTGTCATCATCGGAGGCGCC 78
BSNT_05553 151 TTCGGAAAGATCGTCACATCTCTAGTAAATGATATCATTATGCCTTTGGT 200
||.|||||.|||||.||.||.||.||.||||||.|.||.|||||..|..|
BL02495___msc 79 TTTGGAAAAATCGTAACTTCGCTTGTCAATGATTTGATGATGCCGCTCCT 128
BSNT_05553 201 CGGTTTGCTGCTGGGAGGGCTTGACTTTTCAGGCCTGTCGTTTACGTTTG 250
||||.|.|||||.|||||.||.||.|||||.|..||||||||.||.||||
BL02495___msc 129 CGGTCTTCTGCTTGGAGGCCTGGATTTTTCCGCGCTGTCGTTCACATTTG 178
BSNT_05553 251 GCGATGCTGTAGTGAAATATGGAAGC--TTTATACAGACGATTGTGAACT 298
..|||||.|.|.|.|||||||| || ||.||.|||.||||.||.||.|
BL02495___msc 179 TTGATGCCGAAATTAAATATGG--GCTATTCATTCAGTCGATCGTCAATT 226
BSNT_05553 299 TCTTAATTATATCGTTCTCCATTTTTATCGTCATTCGGACTTTGAAT--- 345
||||.|||||.|||||.|||||||||.|..|.||.|| ||.| ||
BL02495___msc 227 TCTTTATTATTTCGTTTTCCATTTTTCTATTTATCCG--CTAT--ATCTC 272
BSNT_05553 346 --GGGTTAAGGCGCAAAAAAGAAGCAGCAGAAGAAGAGGCTGCGGAGGAA 393
.|.|.||| ||.||.||.||.|.|||||||.|.|||||
BL02495___msc 273 TAAGCTGAAG----AAGAAGGATGCCGAAGAAGAAAAAGCTGC------- 311
BSNT_05553 394 GCGAT--GGATGCGCAGGAGGAGCTCCTGAAAGAAATCAGAGACCTGCTG 441
| .|||.|.|||||.||..|.||.||.|||||..|.||..||.|.
BL02495___msc 312 ----TCCTGATCCTCAGGAAGAATTGCTTAAGGAAATACGGGATTTGTTA 357
BSNT_05553 442 AAGCAGCAAGCAAA---GTCTTCGGAATAA 468
||..||||..|||| .||||.|
BL02495___msc 358 AAAGAGCAGACAAACCGTTCTTAG------ 381
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