Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05542 and BL02493
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05542___ywpH.1.5803.seq
# -bsequence dna-align/BL02493___ywpH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05542___ywpH-BL02493___ywpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05542___ywpH-BL02493___ywpH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05542___ywpH
# 2: BL02493___ywpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 371
# Identity: 237/371 (63.9%)
# Similarity: 237/371 (63.9%)
# Gaps: 52/371 (14.0%)
# Score: 707.5
#
#
#=======================================
BSNT_05542___ 1 ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCT 50
|||||.|||.||.|||||||.|||||.|||.|.|||||||||||.||.||
BL02493___ywp 1 ATGTTTAATGAGATCATGCTCGTCGGGCGTTTGACAAAAGATCCCGAACT 50
BSNT_05542___ 51 TCGCTACACTTCCACCGGTGCGGCAGTTGCACATGTTACGCTCGCGGTGA 100
.||.||.||.||...|||||...|.||||||.||||.|||||.||.||
BL02493___ywp 51 GCGGTATACATCTGACGGTGTCCCTGTTGCAAATGTGACGCTGGCTGT-- 98
BSNT_05542___ 101 ACCGCAG---CTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTC 147
|.|||| .||||||||.||..||||.|||.|.|||||.||.|..|||
BL02493___ywp 99 -CAGCAGGCCTTTCAAGAACGCAGCAGGCGAAGTAGAAGCGGACTTTGTC 147
BSNT_05542___ 148 AATTGCACACTTTGGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCA 197
||||||||.||.|||.|.|||||.||.|..|||||.||....||||||.|
BL02493___ywp 148 AATTGCACTCTATGGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGA 197
BSNT_05542___ 198 AAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGA-----CAAGAAG 242
||||||.||..||.||||..|.||||||.|.||.|||| |||.|.|
BL02493___ywp 198 AAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGCCAATACG 247
BSNT_05542___ 243 -CTATGAAAACGAGGAAGGCGTTAACG----TGTATGTAACAGAAGTGTT 287
|.||..| ||||||| |||| |.|| |.||||||||..|
BL02493___ywp 248 TCAATTCA------GAAGGCG--AACGCACCTTTA--TTACAGAAGTTGT 287
BSNT_05542___ 288 GGCTGACACTGTTC------GTTTTATGGACCCTAAACCCCGGGAAA--- 328
.|| |.|.|| .||||..||| .|||.|| |||||
BL02493___ywp 288 CGC-----CCGGTCAGTCAGATTTTTGGGA---GAAAGCC--GGAAAGCG 327
BSNT_05542___ 329 -------AAGCTGCTGATTGA 342
..||||.||.||.|
BL02493___ywp 328 CATGAGCCGGCTGATGCTTAA 348
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