Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05531 and BL02482
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05531___ywqE.1.5803.seq
# -bsequence dna-align/BL02482___ywqE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05531___ywqE-BL02482___ywqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05531___ywqE-BL02482___ywqE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05531___ywqE
# 2: BL02482___ywqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity: 494/849 (58.2%)
# Similarity: 494/849 (58.2%)
# Gaps: 180/849 (21.2%)
# Score: 1233.5
#
#
#=======================================
BSNT_05531___ 1 ATGATCGATATTCACTGTCACATTCTTCCCGCAATGGATGACGGGGCAG- 49
||||||||||||||.||.|||||||||.|.|...|.|||||.||.||||
BL02482___ywq 1 ATGATCGATATTCATTGCCACATTCTTGCGGGCGTTGATGATGGAGCAGC 50
BSNT_05531___ 50 ----GTGATTCGGCCGACAGCATAGAAATGGC---AAGAGCCGCTGTTCG 92
.|||.| |||||..|||||||||| |..|||||| |.
BL02482___ywq 51 ATGTATGAAT-----GACAGTTTAGAAATGGCTAAACAAGCCGC----CC 91
BSNT_05531___ 93 T-CAGGGAATCCGGACGATCATTGCGACACCTCATCATAACAACGGTGTG 141
| |||||.||.|..|||||.||.||.|||||.||.||....|||| |||
BL02482___ywq 92 TCCAGGGGATTCATACGATTATCGCCACACCGCACCACCGAAACG--GTG 139
BSNT_05531___ 142 TATA---------AAAACGAGCCAGC--TGCAG-----TCAGAGAAGCAG 175
|||| ||||..|||||.| ||||| ||.|
BL02482___ywq 140 TATACGAACATCCAAAAGAAGCCATCCTTGCAGCTGTTTCGG-------- 181
BSNT_05531___ 176 CAGATCAGTTAAACAAACGTTTAAT-CAAA--GAAGACATTCC--TTTAC 220
|||.|| |.||| ..||| |||| |||.||||.|| ||..|
BL02482___ywq 182 -------GTTTAA-AGACG-AGAATGCAAAAGGAAAACATCCCGGTTCTC 222
BSNT_05531___ 221 ATGTGCTTCCGGGACAGGAAATCAGAATCTACGGCGAGGTGGAACAAGAC 270
|| |.|..||||| |||||||||.|..|.||||||||..||.|.|..||.
BL02482___ywq 223 AT-TACCCCCGGG-CAGGAAATCCGCCTGTACGGCGAATTGAAGCGCGAT 270
BSNT_05531___ 271 CTTGCCAAA---CAGCAG-CTGCT----TTCGCTGAATGATACAAAACAC 312
|||| | |.|||| ||||| .|||| .|..|||||..|.
BL02482___ywq 271 CTTG----AGCGCGGCAGACTGCTCAGCCTCGC----CGGCACAAAGTAT 312
BSNT_05531___ 313 ATCTTGATTGAGTTTCCGTTTGATCACGTTCCCCGATATGCGGAGCAGCT 362
.|..|||||||..||||.|...|.||.||.||.||.|||||.||..||.|
BL02482___ywq 313 TTGCTGATTGAACTTCCTTACCACCATGTCCCGCGTTATGCCGAAAAGGT 362
BSNT_05531___ 363 TTTTTATGATTTGCAGCTGAAAGGATATATTCCGGTTATCGCCCATCCTG 412
..|.|..|||.|.||..|.||.||.||.||||||.|.|||||.||.||.|
BL02482___ywq 363 GCTGTTCGATCTCCAATTAAATGGTTACATTCCGATCATCGCACACCCCG 412
BSNT_05531___ 413 AACGCAAC---------AGGGAAATTCGCGAAAACCCGTCCTTGCTGTAT 453
|.||.||| |.|||.|.||.||| || |||||||.
BL02482___ywq 413 AGCGGAACCTTGAATTGATGGAGAATCCCGA-------TC--TGCTGTAC 453
BSNT_05531___ 454 CATCTTGTGGAAAAAGGAGCAGCATCT-----CAGATTAC---TTCAGGA 495
|..||.||..||||.||.|| || |||.|.|| ||| |
BL02482___ywq 454 CGCCTCGTCAAAAACGGCGC-----CTGCGCCCAGCTGACATGTTC---A 495
BSNT_05531___ 496 AGTCTTGCGGGGACC--TTCGGCAAGCAGC-TGAAAGCATTTTCTCTCCG 542
||||||||.|| || |||||| ||.||| |.||| ||
BL02482___ywq 496 AGTCTTGCAGG--CCGTTTCGGC-AGAAGCGTCAAA------------CG 530
BSNT_05531___ 543 GCTGG------------TTGAAGCCAATTTGATCCATTTCGTAGCCTCAG 580
|||.| |||||||.||..|.|||||.||..|.||.||||
BL02482___ywq 531 GCTCGCCCGCCGCTTTCTTGAAGCGAACCTCATCCACTTTATCGCATCAG 580
BSNT_05531___ 581 ATGCCCATAATGTGAAAACGAGAAATTTTCACACTCAAGAGGCCCTTTAT 630
|.|||||.||..|.|..||..||..||| |.|||.|
BL02482___ywq 581 ACGCCCACAACCTCACGACCCGATCTTT---------------CTTTTTT 615
BSNT_05531___ 631 GTT---CTAGAGAAAGAATTCGGCTCG-GAACTTCCTT--ATATGCTGAC 674
|.| .||||.||.||.|.|||| || || ||.||| |..||.|.||
BL02482___ywq 616 GATACAGTAGAAAACGATTACGGC-CGCGA--TTTCTTGAACGTGTTTAC 662
BSNT_05531___ 675 GGAAAATGCAGAGCTTCTCCTGCGGAATC----AGACCATCTTCAGACAG 720
.|||||.||.|..||.|||||| |.||.| ||| ||||.|.||
BL02482___ywq 663 AGAAAACGCGGGCCTGCTCCTG-GAAAACCGGGAGA-----TTCATAAAG 706
BSNT_05531___ 721 --CCTCCGCAGCCGGTCAAAAGAAGAAAA--TTGTTTGGTCTTTTTTAA 765
.|.||||..||.|||||| ||||||| .||||.||.||..|.|.|
BL02482___ywq 707 AAACACCGCGTCCCGTCAAA--AAGAAAAAGCTGTTGGGCCTGCTGTGA 753
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