Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05487 and BL02480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05487___alsS.1.5803.seq
# -bsequence dna-align/BL02480___alsS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05487___alsS-BL02480___alsS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05487___alsS-BL02480___alsS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05487___alsS
# 2: BL02480___alsS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1810
# Identity: 1219/1810 (67.3%)
# Similarity: 1219/1810 (67.3%)
# Gaps: 185/1810 (10.2%)
# Score: 3872.0
#
#
#=======================================
BSNT_05487___ 1 GTGTTGACAAA---AGCAACAAAAGAACAAAAATCCCTTGTGAAAAAC-- 45
||||..|| |||..|.|||.|..||| |.||| ||
BL02480___als 1 ---TTGAATAATGTAGCCGCTAAAAATGAAA---CTCTT-------ACTG 37
BSNT_05487___ 46 --AGAGGGGCGGAGCTTGTTGTTGATTGCTTGGTGGAGCAAGGTGTCACA 93
|||||.||.||||||||.||.|||.|..|..|..|||||||||||||.
BL02480___als 38 TAAGAGGAGCAGAGCTTGTGGTGGATAGTCTCATTCAGCAAGGTGTCACT 87
BSNT_05487___ 94 CATGTATTTGGCATTCCAGGTGCAAAAATTGATGCGGTATTTGACGCTTT 143
|||||.||.||.|||||.||.||.|||||.||||||||.|||||||..||
BL02480___als 88 CATGTTTTCGGTATTCCGGGAGCGAAAATCGATGCGGTGTTTGACGTATT 137
BSNT_05487___ 144 ACAAGATAAAGGACCTGAAATTATCG-TTGCTCGGCACGAACAAAACGCA 192
..||||.||.||.||||||.|.|||| |||| ||.|||||.||.||.|||
BL02480___als 138 GAAAGACAAGGGGCCTGAATTGATCGTTTGC-CGTCACGAGCAGAATGCA 186
BSNT_05487___ 193 GCATTCATGGCCCAAGCAGTCGGCCGTTTAACTGGAAAACCGGGAGT--- 239
|||||.|||||....||||||||.||.||.||||||||.||.||.||
BL02480___als 187 GCATTTATGGCGGCGGCAGTCGGACGATTGACTGGAAAGCCCGGTGTTTG 236
BSNT_05487___ 240 CGTGTTAGTCACATCAGGACCGGGTGCCTCTAACTTGGCAACAGGCCTGT 289
|.|| ||.||.|||||.|||||.||.|||||.||.||.||.||.||..
BL02480___als 237 CCTG---GTGACTTCAGGTCCGGGAGCGTCTAATTTAGCGACCGGTCTTG 283
BSNT_05487___ 290 TGACAGCGAACACTGAAGGAGACCCTGTCGTTGCGCT------TGCTGGA 333
|.|||||.||.||.||||||||.||.||.|||||.|| |||||.|
BL02480___als 284 TAACAGCCAATACAGAAGGAGATCCGGTTGTTGCCCTGGCGGGTGCTGTA 333
BSNT_05487___ 334 AACGTGATCCGTGCAGATCGTTTAAAACGGACACATCAATCTTTGGATAA 383
|| ..|.||.||||||.|.|||...||.||||||||..|||||||
BL02480___als 334 AA------AAGAGCGGATCGTCTCAAAAAAACTCATCAATCGATGGATAA 377
BSNT_05487___ 384 TGCGGCGCTATTCCAGCCGATTACAAAATACAGTGTAGAAGTTCAAGATG 433
|||||||.|.||.|||||||||||.|||||.||.|.||||||..||||||
BL02480___als 378 TGCGGCGTTGTTTCAGCCGATTACGAAATATAGCGCAGAAGTGGAAGATG 427
BSNT_05487___ 434 TAAAAAATATACCGGAAGCTGTTACAAATGCGTTTAGGATAGCGTCAG-- 481
..||.||.|||||.||.|||||.||.|||||.||.|| ||||.|.|
BL02480___als 428 CGAACAACATACCTGAGGCTGTAACCAATGCATTCAG---AGCGGCGGCT 474
BSNT_05487___ 482 -CAGGGCAGGCTGGGGCCGCTTTTGTGAGCTTTCCGCAAGATGTTGTGAA 530
|.||.||||||||.||.||.|||.|.|||||||||||.||.|||..|..
BL02480___als 475 TCTGGACAGGCTGGCGCAGCGTTTCTCAGCTTTCCGCAGGACGTTACGGC 524
BSNT_05487___ 531 TGAAGTC--ACAAATAC---------GAAAAACGTGCGTGCTGTTGCAGC 569
.| ||| .|||.|.| |||||.|.||| |.||
BL02480___als 525 CG--GTCCGGCAACTGCCAAGCCGGTGAAAACCATGC---------CGGC 563
BSNT_05487___ 570 ACCAAAACTCGGTCCTGCAGCAGATGATGCAATCAGTGCGGCCATAGCAA 619
.||.||.||.||..|.||..|.||.||...||||||.||||||||.||.|
BL02480___als 564 GCCGAAGCTGGGCGCGGCTTCGGACGAACAAATCAGCGCGGCCATCGCCA 613
BSNT_05487___ 620 AAATCCAAACAGCAAAACTTCCTGTCGTTTTGGTCGGCATGAAAGGCGGA 669
||||.||.|..||.||.|||||||||||..|.|||||.||||||||||||
BL02480___als 614 AAATTCACAATGCGAACCTTCCTGTCGTGCTTGTCGGGATGAAAGGCGGA 663
BSNT_05487___ 670 AGACCGGAAGCAATTAAAGCGGTTCGCAAGCTTTTG--AA--AAAGGTTC 715
|||||.|||||.|||.|||||||||| ||.|.|| || ||| ||..
BL02480___als 664 AGACCTGAAGCGATTGAAGCGGTTCG---GCGTCTGCTAAGGAAA-GTGA 709
BSNT_05487___ 716 AGCTTCCATTTGTTGAAACATATCAAGCTGCCGGTACCCTTTCTAGAGAT 765
|.||.||.||||||||||||||.|||||.||.|||||.||.|||...|||
BL02480___als 710 AACTGCCGTTTGTTGAAACATACCAAGCAGCGGGTACGCTGTCTCACGAT 759
BSNT_05487___ 766 TTAGAGGATCAGTATTTTGGCCGTATCGGTTTGTTCCGCAACCAGCCTGG 815
||.||.||.|||||.||.|||||.|||||..|.||||||||.|||||.||
BL02480___als 760 TTGGAAGACCAGTACTTCGGCCGGATCGGACTATTCCGCAATCAGCCCGG 809
BSNT_05487___ 816 CGATTTAC-TGCTA---GAGCAGGCAGATGTTGTTCTGACGATCGGCTAT 861
.| || ||||| ||..|.||.|||||.|||.|||||.||||||||
BL02480___als 810 AG----ACATGCTATTGGAAAAAGCGGATGTCGTTTTGACGGTCGGCTAT 855
BSNT_05487___ 862 GACCCAATTGAATATGATCCAAAATTCTGGAATGTCAATGGAGACCGGAC 911
||.||.||||||||.|||||....||.|||||||..||.||.||.||.|.
BL02480___als 856 GATCCGATTGAATACGATCCGGTCTTTTGGAATGGAAAAGGCGAACGAAG 905
BSNT_05487___ 912 AATTATCCATTTAGACGAGATTATCGCTGACATTGATCATGCTTACCAGC 961
..|.||.|||.|.|||||.||....||.||.||.|||||||..||.||||
BL02480___als 906 CGTGATTCATCTTGACGAAATACAAGCCGATATCGATCATGACTATCAGC 955
BSNT_05487___ 962 CTGATCTTGAATTGATCGGTGACATTCCGTCC----ACGATTAATCATAT 1007
|.||..|.||.||||||||.||.|| || | |||.|.||.|||||
BL02480___als 956 CCGAAATCGAGTTGATCGGCGATAT--CG--CAGAGACGTTAAACCATAT 1001
BSNT_05487___ 1008 CGAACACGATGCTGTGAAAGTGGAATTTGCA-----GAG-CGTGAGCAGA 1051
.|||||.|||.||.||...| |||.|| ||| |.|..|||
BL02480___als 1002 TGAACATGATTCTCTGCCGG-----TTTCCATCGACGAGTCCTTTGCA-- 1044
BSNT_05487___ 1052 AAATCCTTTC--TGAT---TTAAAACAATATATGCA-TGAAGGTGAGC-A 1094
|||.|| |||| ||.||..|| ||| ||.|| |||| |
BL02480___als 1045 ----CCTGTCCTTGATTACTTGAAGAAA-----GCACTGGAG--GAGCAA 1083
BSNT_05487___ 1095 GGTG-----CCTGCAGATTGGAAATCAGACAGA----GCGCACCCTCTTG 1135
.|.| |||..||| ||...|.||.|| |..||.||.||..
BL02480___als 1084 AGCGAACCTCCTAAAGA----AACAAAAACTGATCTTGTTCATCCGCTGC 1129
BSNT_05487___ 1136 AAATCGTTAAAGAGTTGCGT--AATGC--AGTCGATGATCATGTTACAGT 1181
||||||||...||.|||||| |.||| || |||||| || |.||.||
BL02480___als 1130 AAATCGTTCGCGATTTGCGTGAACTGCTGAG-CGATGA-CA--TAACGGT 1175
BSNT_05487___ 1182 AACTTGCGATATCGGTTCGCACGCCATTTGGATGTCACGTTATTTCCGCA 1231
.||||||||.|||||.||.||.||.|||||||||||..|.||||||||||
BL02480___als 1176 GACTTGCGACATCGGCTCCCATGCGATTTGGATGTCTAGATATTTCCGCA 1225
BSNT_05487___ 1232 GCTACGAGCCGTTAACAT----TAATGATCAGTAACGGTATGCAAACACT 1277
.||| ||||...||| |..||||....|||||.|||||.||.||
BL02480___als 1226 CCTA----CCGTCCGCATGGACTGCTGATTTCCAACGGCATGCAGACGCT 1271
BSNT_05487___ 1278 CGGCGTTGCGCTTCCTTGGGCAATCGGCGCTTCATTGGTGAAACCGGGAG 1327
.||.||.||..|.||.|||||.||.|..||..|..||||.||.||||||.
BL02480___als 1272 TGGGGTGGCTTTGCCGTGGGCGATTGCAGCAACGCTGGTCAATCCGGGAC 1321
BSNT_05487___ 1328 AAAAAGTGGTTTCTGTCTCTGGTGACGGCGGTTTCTTATTCTCAGCAATG 1377
|.|||||.||.|||||.||.||.|||||.||.|||.|.|||||.||.|||
BL02480___als 1322 AGAAAGTCGTGTCTGTTTCCGGGGACGGGGGCTTCCTGTTCTCCGCGATG 1371
BSNT_05487___ 1378 GAATTAGAGACAGCGGTACGACTAAAAGCACCAATTGTACACATTGTATG 1427
||..|.|||||||||||..||.|||||||.||.||.||.||||||||.||
BL02480___als 1372 GAGCTTGAGACAGCGGTCAGATTAAAAGCGCCGATCGTTCACATTGTCTG 1421
BSNT_05487___ 1428 GAACGACAGCACATATGACATGGTTGCATTCCAGCAATTGAAAAAATATA 1477
|||.|||||||||||.||.||||||||.||||||||...||..|||||.|
BL02480___als 1422 GAATGACAGCACATACGATATGGTTGCGTTCCAGCAGGAGATGAAATACA 1471
BSNT_05487___ 1478 ACCGTACATCTGCGGTCGATTTCGGAAATATCGATATCGTGAAATATGCG 1527
|.||.||.||.|..|||||.|||||....||||||||.||.||||||||.
BL02480___als 1472 AGCGGACGTCCGGAGTCGACTTCGGCGGAATCGATATTGTAAAATATGCT 1521
BSNT_05487___ 1528 GAAAGCTTCGGAGCGACTGGCTTGCGCGTAGAATCACCAGACCAGCTGGC 1577
||||||||.||.||.|..||.||..|.||..|.|||||.|||.|..||||
BL02480___als 1522 GAAAGCTTTGGTGCAAAAGGTTTAAGGGTCAATTCACCTGACGAATTGGC 1571
BSNT_05487___ 1578 AGATGTTCTGCGTCAA----GGCATGAACGCTGAAGGTCCTGTCATCATC 1623
|||.| |||.|.|| |.|.|| |.||.||.||.|||||..||||.
BL02480___als 1572 AGAGG---TGCTTAAAGCTGGTCTTG-ATGCAGAGGGGCCTGTTGTCATT 1617
BSNT_05487___ 1624 GATGTCCCGGTTGACTACAGTGATAACATTAATTTAGCAAGTGACAAGC- 1672
|||.|.|||||.||.|||||.||.||||||.||||.|| .||..|||
BL02480___als 1618 GATATTCCGGTCGATTACAGCGACAACATTCATTTGGC---CGATCAGCG 1664
BSNT_05487___ 1673 --TTCCGAAAGAATTCGGGGAAC----TCATGAAAACGAAAGCTCTCTAG 1716
||||.|||.||||.|.||||| |.||.|| .|||| |||||.
BL02480___als 1665 TTTTCCAAAAAAATTTGAGGAACATTTTAATAAA----GAAGC-CTCTAA 1709
BSNT_05487___ 1716 ---------- 1716
BL02480___als 1710 GCAATCTTGA 1719
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