Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05468 and BL02475
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:36
# Commandline: needle
# -asequence dna-align/BSNT_05468___ywtD.1.5803.seq
# -bsequence dna-align/BL02475___pgdS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05468___ywtD-BL02475___pgdS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05468___ywtD-BL02475___pgdS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05468___ywtD
# 2: BL02475___pgdS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1492
# Identity: 863/1492 (57.8%)
# Similarity: 863/1492 (57.8%)
# Gaps: 377/1492 (25.3%)
# Score: 2460.0
#
#
#=======================================
BSNT_05468___ 1 ATGAGACACTCTCTTTTTATTTGCCCAGCATATTCATTCTGTAAAAATAT 50
BL02475___pgd 0 -------------------------------------------------- 0
BSNT_05468___ 51 CAAAAAGTCTCTTAACATATTCAAAAAAATACCGATGTTAAAACTGCAAA 100
BL02475___pgd 0 -------------------------------------------------- 0
BSNT_05468___ 101 AAGAGGAGGAGATAATAAAAGTGAACACACTGGCAAACTGGAAGAAGT-- 148
..|||||.||||| .||||||| ||.||||
BL02475___pgd 1 --------TTGATAAAAAAAG---------CGGCAAAC---AAAAAGTTG 30
BSNT_05468___ 149 -TTTTG-CTTGTG-----GCGGT--------TATCATTTGTTTTT--TGG 181
||||| .||||| ||||| |.|| |||.||||| .|.
BL02475___pgd 31 GTTTTGTTTTGTGGAATTGCGGTGCTTTGGATGTC-TTTATTTTTAACGA 79
BSNT_05468___ 182 TTCCAATTATGACAAAAGCG--------------GAG---ATTGCGGAAG 214
.|| ||.||||...|.||| ||| ||.||||||.
BL02475___pgd 80 ATC--ATAATGATGTACGCGCCGATACGATCGGCGAGAAAATAGCGGAAA 127
BSNT_05468___ 215 CTG--ATACATCATCAGAATTGATTGTCAGCGAAGCAAAAAACCTGCTTG 262
||| |.|||.| ||||..|| |||||
BL02475___pgd 128 CTGCCAGACAGC-------TTGAGGGT--GCGAA---------------- 152
BSNT_05468___ 263 GATATCAGTATAAATATGGCGGGGAAACGCCGAAAGAGGGTTTCGATCCA 312
||| ||| .||.|||||.||.|.|||||||..|||.||.||..|.
BL02475___pgd 153 -ATA-CAG-----CTACGGCGGAGAGAAGCCGAAAACGGGGTTTGACTCG 195
BSNT_05468___ 313 TCAGGATTGATACAATATGTG-TTCAGTAAGGCT-GATATTCATCTGCCG 360
|||||.||..|.||||||||| |||| |..||| ||||||...||.|||
BL02475___pgd 196 TCAGGCTTTGTGCAATATGTGTTTCA--ATCGCTCGATATTACGCTTCCG 243
BSNT_05468___ 361 AGATCTGTAAACGACCAGTATAAAATC---GGAACA------GCTGTAA- 400
|||.|.|||||.||.|| ||..|.|| |||.|| ||.||.|
BL02475___pgd 244 AGAACGGTAAAGGAACA--ATCGACTCTTGGGAGCAGTGTCGGCCGTCAG 291
BSNT_05468___ 401 -AGCCGGAAAACCTGAAGCCGGGTGATATTTTGTTTTTCAAGAA-----A 444
|||..||||| |||.||..||.|.||||||||||| |
BL02475___pgd 292 CAGCTCGAAAA---------GGGGGACCTTGTCTTTTTCAAGAATGCCGA 332
BSNT_05468___ 445 GAGGGAAGC-AACGGCTCTGTTCCGACACATGACGCCCTTTATATCGGAG 493
|..||||.| .|||| .|||||.||||.||||.|.|||.|.|||.
BL02475___pgd 333 GCTGGAATCGGACGG------ACCGACCCATGTCGCCATCTATTTGGGAA 376
BSNT_05468___ 494 ACGGCCAAATGGTACACAGTACACAGTCAAAAGGGGTTATCATCACCAA- 542
|.|..|||||..|.|||||.|||.|.|||||.||||||.||.|.||.||
BL02475___pgd 377 ATGATCAAATCATCCACAGCACAAAATCAAACGGGGTTGTCGTGACAAAG 426
BSNT_05468___ 543 -TTACAAAAAAAGCAGC---TATTGGAGC----GGAACTTATATCGGAGC 584
|| .||.||||| ||.|||||| || |||.|...|||
BL02475___pgd 427 CTT-----GAAGGCAGCTCTTACTGGAGCTCGGGG----TATTTTAAAGC 467
BSNT_05468___ 585 GAGACGAATCGC-----TGCC---GATCCGGCAACGGCT--GAT-GTTCC 623
||.|.|.|||.| .||| ||| | ||| |.|||
BL02475___pgd 468 GAAAAGGATCACAAAAGAGCCTGAGAT-----------TTCGATGGATCC 506
BSNT_05468___ 624 TGTCGTTCAGGAGGCCGAAAAA--TATATCGGTGTCCCATATGTGTTTGG 671
|||||||||..|.|| ||||| |||.|||||||.||.|||||.|||||
BL02475___pgd 507 TGTCGTTCAAAAAGC--AAAAAGCTATGTCGGTGTTCCTTATGTATTTGG 554
BSNT_05468___ 672 CGGAAGCACGCCG----TCAGAGGGCTTTGATTGCTCGGGGCTTG-TGCA 716
.||.|.|.|.||| || ||.|||||.||.|||||| ||| ..||
BL02475___pgd 555 AGGCAACTCTCCGGATCTC----GGATTTGACTGTTCGGGG-TTGACCCA 599
BSNT_05468___ 717 ATATGTGTTTCA-ACAGGCACTCGGCATTTATCTGCCGCGATCAGCCGAA 765
|||.|| .|||| |.|||..||||||.|||||.||||..|.||.||.|||
BL02475___pgd 600 ATACGT-CTTCAGAGAGGTGCTCGGCGTTTATTTGCCAAGGTCGGCTGAA 648
BSNT_05468___ 766 CAGCAGTGGGCAGTGG-------------GCGAGAAGATAGCCCCTCAGA 802
|||||.|||||.||.| ||..|||||||.||
BL02475___pgd 649 CAGCAATGGGCTGTCGGTCAAAAGGTGAAGCTTGAAGATATCC------- 691
BSNT_05468___ 803 ACATAAAGCCTGGTGATGTCGTCTATTTCAGCAATACGTATAAAACGGGA 852
.|||.||||||||..|.|.|||||||||||||||.|||.|||||
BL02475___pgd 692 ------GGCCGGGTGATGTTTTGTTTTTCAGCAATACGTACAAACCGGGA 735
BSNT_05468___ 853 ATTTCACATGCAGGCATTTATG-CGGGCGCAGGCAGGTTCATCCAGGCGA 901
||.||.|||...|||||.|||| ||||.||.||| ||||.|||||.||||
BL02475___pgd 736 ATATCCCATAACGGCATCTATGCCGGGGGCGGGC-GGTTTATCCATGCGA 784
BSNT_05468___ 902 GCAGGTCAGAAAAAGTAACCATTTCCTATTTGTCAGAGGAT---TACTGG 948
||.|.|||.|.|||||.||.||.|||||.||||| ||.| ||.|||
BL02475___pgd 785 GCCGTTCAAATAAAGTGACGATATCCTACTTGTC---GGCTTCCTATTGG 831
BSNT_05468___ 949 AAATCGAAGATGACGGGTATTC-GCCGATTTGACAACCTGACAATCCC-G 996
.|...||||.|.||.|| |.|| |.||.|||||||||.|| |||| |
BL02475___pgd 832 CAGAAGAAGTTCACAGG-AGTCAGACGTTTTGACAACATG----TCCCTG 876
BSNT_05468___ 997 AAAGAAAATCCGATTGTTTCCGAAGC---GACGCTTTATGTCGGAGAAGT 1043
..|.|||||||||||||.|||||||| .|.|| ||.||||.|||||
BL02475___pgd 877 CCAAAAAATCCGATTGTATCCGAAGCCATCAGGC---ATATCGGCGAAGT 923
BSNT_05468___ 1044 GCCTTA-CAAACAGGGCGGAGTAACACCT-GAGACAGGATTTGATACAGC 1091
...||| |||| |.|||||...|.|.||| .||| |||.||||||||.||
BL02475___pgd 924 CGGTTATCAAA-AAGGCGGCACATCGCCTAAAGA-AGGCTTTGATACGGC 971
BSNT_05468___ 1092 TGGATTTGTCCAATATGTATACCAGAAAGCAGCCGGTAT-----TTCCCT 1136
|||.|||.||||||||||.|||.|.|..||.||.||..| |||
BL02475___pgd 972 TGGGTTTATCCAATATGTCTACAAAACGGCGGCAGGAGTGGAGCTTC--- 1018
BSNT_05468___ 1137 GCCTCGA--TACGC-----AACAAGCCAGTACAATGC-CGGAACTAAG-- 1176
||| ||.|| ||||| |||| || ||| .||||
BL02475___pgd 1019 ----CGAGGTATGCTGACAAACAA-----TACA--GCACGG--GTAAGAA 1055
BSNT_05468___ 1177 -ATTAAGAAGGCGGACCTGAAGCCGGGAGACATTGTGTTCTTTCAATCAA 1225
||||..||...|||.||..||||.||||||||.||.||||||.||..||
BL02475___pgd 1056 AATTACCAAACAGGAGCTTGAGCCTGGAGACATCGTCTTCTTTAAAGGAA 1105
BSNT_05468___ 1226 CAAGCT----TAAATCCCTCCATCTATATCGGAAACGGACAAGTTGTTCA 1271
|.| || |.||||||.|||||||||||||||||||.||.||.||||.
BL02475___pgd 1106 CCA-CTGTTATGAATCCCGCCATCTATATCGGAAACGGCCAGGTCGTTCT 1154
BSNT_05468___ 1272 TGTCACATTATCAAACGGCGTGACCATCACCA-ATATGAACACGAGCACA 1320
||||||.||.||...|||.||.||.| ||.|| |||||.|.||||||.|.
BL02475___pgd 1155 TGTCACCTTGTCTGCCGGTGTAACGA-CAGCAGATATGGAGACGAGCGCC 1203
BSNT_05468___ 1321 TATTGGAAGGATAAATACGCAGGAAGTATACGAGTGCAATAA 1362
||||||||.|||||||||||.|||||..|..||.|..|.||.
BL02475___pgd 1204 TATTGGAAAGATAAATACGCCGGAAGCGTCAGAATTGAGTAG 1245
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