Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05451 and BL02462
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05451.1.5803.seq
# -bsequence dna-align/BL02462.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05451-BL02462.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05451-BL02462.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05451
# 2: BL02462
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3978
# Identity: 1712/3978 (43.0%)
# Similarity: 1712/3978 (43.0%)
# Gaps: 1761/3978 (44.3%)
# Score: 3604.5
#
#
#=======================================
BSNT_05451 1 ATGAATAAGAAA---TTAAAAATAGTAAAAAGAAGAGCGAAGTTTTTATT 47
|||||.||.||| ||.|||| .|||||.||.| ||||||
BL02462 1 ATGAACAAAAAAGTTTTGAAAA---GAAAAATAAAA--------TTTATT 39
BSNT_05451 48 --AGAACC-ATTTAAAAC-ATACACT-AACAACAAAAATTTT-----AAA 87
|||.|| |||.|.||| || || ||.||.|.||||..| |||
BL02462 40 AAAGACCCTATTGAGAACTAT---CTCAAAAAAAGAAATCATAGAAGAAA 86
BSNT_05451 88 CGCACTGTTGAATA--CACGAGAAATTTCAAGAAAAATAAAATCGAT--- 132
| |||| .|||..||||||.|..||||||..||| |.|
BL02462 87 C---------AATAAGTACGCTAAATTTTATAAAAAATTGAAT-GTTGTG 126
BSNT_05451 133 --CCTCATATTATTTTCTATGAATCTTA----TCAT-GGAAAAGCGATGA 175
|..||.| |||||.||.||| | |.|| ||||.|| .||.|
BL02462 127 GACAACACA--ATTTTATACGAA----AGCCGTGATGGGAAGAG-TATCA 169
BSNT_05451 176 ATGACAATCCATATGCAATATTTAAGCATCTAGTT----AACAATGAAGA 221
.|||||.|||.|.||||||||||.| |||.|| ||.|||..|||
BL02462 170 CTGACAGTCCTTTTGCAATATTTGA----CTATTTGATAAAAAATCCAGA 215
BSNT_05451 222 ATACAAAAATTTTACACACGTATGGGCGTTAAATGATCAG-----GA--- 263
||.|||..|||.||..||..|.|||.| .|.|| ||| ||
BL02462 216 ATTCAACCATTATAAGCATATTTGGAC---TATTG--CAGATTTTGAAGC 260
BSNT_05451 264 ---CAATCC--TTAT-GCCAATAAGTATAAAGGCTTGAAAAATGTAAGA- 306
|.|.|| |||| .|| ||||||||||...||...||||| .||
BL02462 261 GCTCGAGCCAGTTATCTCC---AAGTATAAAGATATGCCGAATGT-TGAG 306
BSNT_05451 307 TTTGTTA----AAGTTCATAGTGAGGAATATATTAAATATTTGACAAAGG 352
||||||| ||.|||| ||..||||..|..||||||||.|.|..|
BL02462 307 TTTGTTAAAAGAAATTCA----GATAAATACCTGCAATATTTGGCTACTG 352
BSNT_05451 353 CAAAATATTTAATTAATA-----ATGTTAC------TTTTCCTACCTACT 391
|.||.|||.||||.|||| |.||||| |||| ||..
BL02462 353 CCAAGTATCTAATCAATAACTCTACGTTACAGTCATTTTT------TATA 396
BSNT_05451 392 TTCAAAAGAAGGATGAACAAATTTATATTAATACTTGGCATGGAACTCCT 441
|.|||| ||.||||||.|.|||||.||.||.|||||||||||.||.
BL02462 397 TGCAAA-----GAAGAACAAGTATATATAAACACATGGCATGGAACGCCA 441
BSNT_05451 442 CTTAAAACTCTTGGAAAAGATATGGAGGG-------GCCTATTGGTCAGC 484
||.||||...|.|||...|||||....|| |||.||| |
BL02462 442 CTGAAAAGCATGGGATTTGATATTCCAGGAAATCCAGCCCATT------C 485
BSNT_05451 485 ATAAAA-ATATCCAAAGAAACTTT----TTGCATAGTGACTATATCTTAT 529
|.|||| .|| |..||||||||| .||||.| |||.
BL02462 486 ACAAAACGTA--CTTAGAAACTTTATAAGTGCAGA-----------TTAC 522
BSNT_05451 530 C-------TCCAAATAA--ATTCACTTCAGAGAAATTAAT-TGATT---- 565
| ||||||||| || ||| |..||| ||.||
BL02462 523 CTGCTGAGTCCAAATAAGCAT--ACT--------ACCAATATGTTTTTGA 562
BSNT_05451 566 ----CTCATGATTTGGAAGGCCTTTACAATGGGGAAATCATCGAAGAGGG 611
|| ||.|.||.|||||.||.||||..||.||.|||||.|||||.||
BL02462 563 ACAGCT-ATAAGTTAGAAGGGCTGTACAGCGGTGAGATCATTGAAGAAGG 611
BSNT_05451 612 TTATCCAAGGATGGATTTAACCTTTAATACAGATAAA-----GAAGAACT 656
.|||||||||||.|||||||||.||||.|| .| |||||..|
BL02462 612 CTATCCAAGGATTGATTTAACCCTTAACAC-----GAGCCCCGAAGAGTT 656
BSNT_05451 657 TAGAAAAACGTTA--GAAAACA-TTATAG--AACTTGATCCTC-----AT 696
| |||.|||| .||||.| ||| || .|| |||| ||| ||
BL02462 657 T----AAAAGTTATTTAAAAGACTTA-AGTTTAC-TGAT-CTCAAATGAT 699
BSNT_05451 697 AAAAAAATTATTCTGTATGCACCTACATGGAGAGGAGAAGTAGGAAGTGT 746
||..|||..||..|.||.||.||.|||||||.||| ||| .|||||
BL02462 700 AAGCAAACGATCTTATACGCTCCAACATGGAAAGG-GAA-----TAGTGT 743
BSNT_05451 747 CTCCAACATTAATGAA-GAGCTATTT--AATCATATTTCGGCAT-TGAAT 792
.| |||.|.|||..|| ||..|.||| ||| ||||||.| || |||||
BL02462 744 AT-CAAAAGTAAAAAACGACGTTTTTCAAAT--TATTTCTG-ATATGAAT 789
BSNT_05451 793 -----------GAAAAGATTCCGGA-TGATTATCA---GCTTATATTAAA 827
||||| ||.|.| |||||||.| | ||| ||||||
BL02462 790 TATTTAGAGGAGAAAA---TCGGCAGTGATTATAATGTG-TTA-ATTAAA 834
BSNT_05451 828 GGTCCATACTCTTTTATTTAAATA------CAT-TAAACACGATGAACAA 870
|.|| ||.|.|| ||||.||| |.| |||| |.|..|.|.
BL02462 835 GTTC---ACCCGTT--TTTATATAGTGAGGCTTCTAAA---GTTTCAGAG 876
BSNT_05451 871 TTAATGAA---TAAGTGTATTCCGGATTGTATAGATACAAATGAGT---- 913
|||| || .||.|| ||.||.||.|.|||.|||||.||..|||
BL02462 877 TTAA--AAGGGAAACTG-ATACCTGACTTTATTGATACTAACCAGTTGTT 923
BSNT_05451 914 ---TACTATCGCTTGTAGATATCCTGATAACGGATTATTCAAGTATTTTC 960
||||.||| |.|||| |.|||||.||.|||||.||.||.||.
BL02462 924 AAGTACTGTCG-----ACATAT--TAATAACTGACTATTCCAGCATATTT 966
BSNT_05451 961 TTTGATTATATGGCAACCAACAAACCAATTCTGTATTTTATGT------- 1003
|||||||.|.|.|..||..|....||.|||.|||.||.|||||
BL02462 967 TTTGATTTTCTTGTCACTGATCGGCCGATTTTGTTTTATATGTGGGATGC 1016
BSNT_05451 1004 --ATGA-TAAAGAGCAGTATCTGAAAAAAAGAGGCATGTACTTGGATGTT 1050
|||| ||.| || |||.||.||||.|..| ||.||
BL02462 1017 CGATGACTACA-------AT---AAACAACGAGGAAAAT------ATATT 1050
BSNT_05451 1051 AACACA-------CTAGCGGGTCCAATATGT--AAAACAACAGATGAGCT 1091
|||| | ||..|.||||| ||| .|.||||
BL02462 1051 AACA-ATGAAGATCTTCCAGGTCC----TGTCCTATACAA---------- 1085
BSNT_05451 1092 TGCAA---AATGTA-TCAAAGAAATTG--AGTCTGTA-CAAGACCGATAT 1134
||.|| ||| || ||.|||.||||| |.|.|..| |||| .||.||
BL02462 1086 TGTAAGGGAAT-TAGTCGAAGCAATTGGCAATATTCATCAAG--TGAAAT 1132
BSNT_05451 1135 CAGTCTGTATATCAA---------GAAATGAATGAGGT---CTATATCAA 1172
|| |.||.|||| ||||.||||.|.|| .|.||..||
BL02462 1133 CA----GAATTTCAAACAAATTATGAAAAGAATAAAGTGAAATTTACGAA 1178
BSNT_05451 1173 --AAGA-GTTGGAGATTCTACTCAAAAAATAGTTGATATTATATTTAAAG 1219
|.|| |..|||.||..|||..|||.|.|||||||.|..||.||.||
BL02462 1179 TCACGACGACGGAAATGTTACGAAAAGAGTAGTTGAGAAAATCTTCAA-- 1226
BSNT_05451 1220 GCAAAC-AGGAACAGTCTGACTGTGTCTTTGATGTTAAAGAACCTCACAA 1268
|||| |||.|||.| |||.||| ..|||.|||.|...|.||
BL02462 1227 --AAACAAGGGACAAT-TGAATGT--------AATTAGAGATCTGGATAA 1265
BSNT_05451 1269 AA------AAAACATTTTGATTTATTGTGGCGGTTTCTTGAATAATGGTA 1312
|| ||||.||.|||||.|||...||.||..|....|||||.||.|
BL02462 1266 AAAGAAAGAAAAGATCTTGATCTATCCAGGAGGAATGAAAAATAACGGCA 1315
BSNT_05451 1313 TTACATCTTCAGCTATAAATTTATTAAACAATATCGATTACGAAAAGTAT 1362
||||||||||.....|.||||||.|.||.|||||.||.|..||.||.|||
BL02462 1316 TTACATCTTCTTTCCTTAATTTAATGAATAATATTGACTTTGATAAATAT 1365
BSNT_05451 1363 AATGTTATTG-TGATTGATAAAGGAAACT----ACGATAAAGA-ATCTTC 1406
.||||.| | ||.||.|| |.||||| || |.|||| |..|||
BL02462 1366 GATGTAA--GCTGTTTTAT---GAAAACTCCCCAC--TCAAGAGAGGTTC 1408
BSNT_05451 1407 T-TATAATATAAGCAGGATAAATGAAAAAGCAAAGCGGGTCTATCGAGTA 1455
| .|.|||||.|.|| ||.||||.|| ||| |.| ||
BL02462 1409 TAAACAATATCAACA----AAGTGAATAA--AAA-------TGT----TA 1441
BSNT_05451 1456 GGAAGCATGAACTTAACCATA--AAAGACTGGT------ATCTACA--TG 1495
|| || |||| .|||.||||| .|.|||| |.
BL02462 1442 GG----------TT---CATATTTAAGCCTGGTTTACCAGTTTACACGTT 1478
BSNT_05451 1496 GATTGATGAATA-AAAG-------GGGTTACAC---CGAGGAATTAGC-- 1532
|.||||||.||| |||| || |.||| .|.|||..||.|
BL02462 1479 GTTTGATGTATATAAAGATAAGCTGG--TGCACAATAGGGGAGCTAACGG 1526
BSNT_05451 1533 -------GAAAAGGAAG------CCTGAAGA--GATTTTTAAAAGAGAA- 1566
||||| |||| ||.||.|| .||.||| |||||||
BL02462 1527 TAAACTTGAAAA-GAAGTTGTACCCAGAGGATGCATATTT--AAGAGAAC 1573
BSNT_05451 1567 ATAAATCGTATGTTGGGAAACGCGAGAATTGATATA-GCAGTCGATTTTA 1615
||||| .|..|.||.|||||..|.|.|.||||| || |.|.|.|||||.|
BL02462 1574 ATAAA-AGGCTTTTTGGAAAATCTAAATTTGAT-TATGTAATTGATTTCA 1621
BSNT_05451 1616 GTGGATACGTACCT--TTCTGGACGATGGTCATGTCTTTGGGAGAATTTC 1663
|.||.||| |.|| |.||| ||.||.||.||| ||..|.|.
BL02462 1622 GCGGGTAC--AGCTTATACTG------GGCCAAGTATTT---AGTTTGTG 1660
BSNT_05451 1664 C----CCAAAAAAGCA-------TATATCAAC----------------AT 1686
| .||||||||.| |||||..|| ||
BL02462 1661 CAGATGCAAAAAAGAAGATTTGCTATATGCACAATGACCTCTTGTCAGAT 1710
BSNT_05451 1687 AATGATATGCTTG------------------------------CTGAGA- 1705
|.||| |.|.||| ||||||
BL02462 1711 AGTGA-AAGATTGGTTAATGGGCGTCGTCCGCACAAAATTAATCTGAGAG 1759
BSNT_05451 1706 ---------------CCAATAAAATC-ATAA-ATGGTAAGTAT----AAG 1734
.|||||||.|| |||| .|.||||||.| |||
BL02462 1760 GATTATTCTCTATTTACAATAAATTCGATAAGCTAGTAAGTGTTTCAAAG 1809
BSNT_05451 1735 CATAAACG-------TAAATTA---------GGC---ATAGTCT------ 1759
..|||| |||||.| .|| |||..||
BL02462 1810 --GGAACGATGGAGTTAAATAAAAAGAATCTTGCTATATATGCTGATGAG 1857
BSNT_05451 1760 ------TTTCTCTATATAAATG--CTTTAATAAAATCGTGTCTGTTGCAA 1801
|||..|||||| |||| ||.||.| ||||.|| ||
BL02462 1858 GACAAATTTGACTATAT-AATGAACTCTATT--AATCCTG--------AA 1896
BSNT_05451 1802 AACATACTAGGGATC-------TAAACG---------CTGAAAATTTAGC 1835
||.||.||.|||||| ||||.| ||||.||.|||||
BL02462 1897 AAAATTCTCGGGATCGATCATTTAAAAGAAAAGGATACTGAGAAATTAGC 1946
BSNT_05451 1836 ---------ACAG---CATGTTG------------ATACAAAT------- 1854
|||| ||||..| |||.||.|
BL02462 1947 AATCGCTGAACAGAACCATGAAGAAATCATAGCCAATAAAAGTTTTAAAG 1996
BSNT_05451 1855 --------AAGATGGTTTATG-----------TTCATAACTC-ATTAAAT 1884
|||||.||..||| |||||.| || |||.|.|
BL02462 1997 CAAGGGCAAAGATTGTAAATGTCGAAGGCTTCTTCATTA-TCAATTCACT 2045
BSNT_05451 1885 G-TAGACAA----AATTAAAGATT--------CTGTGGAA---------- 1911
| |.||.|| |||.|||.||| ||..||||
BL02462 2046 GTTTGATAAAGTGAATCAAAAATTAACACCGGCTAAGGAATTTGAAAATA 2095
BSNT_05451 1912 --------------------------------AATCATG-----GTTTTT 1924
|||.||| ||||||
BL02462 2096 AAGAAGTCACCATAATACGAGAAGCTCATACGAATGATGGAAAAGTTTTT 2145
BSNT_05451 1925 T---AATTGAGAGCTATGAGGGACAAGACTATATTATT------------ 1959
| ||||.| |||| |.|.|||..|||||||
BL02462 2146 TATAAATTTA---CTAT-----AGATGACAGTATTATTGGGTGGCTGAAC 2187
BSNT_05451 1960 CAAAAG------GAAGAAAAGCCAG-GAGCATTTAGTATT-------AAA 1995
|.|.|| ||...|..||||| .||||||| ||.| |||
BL02462 2188 CTAGAGGCTTTTGAGTTATTGCCAGACAGCATTT--TACTTGAGAGGAAA 2235
BSNT_05451 1996 GGCATTAGACTG---------------CCTAAACATAACGAAATC----- 2025
|.||.||.|||| |||||....|||||.|||
BL02462 2236 GTCAATAAACTGGCAGTCATTCAACACCCTAATGGAAACGACATCTGGAA 2285
BSNT_05451 2026 ------------AACTT----TGTAAACATGGGAAGGTTATC-ACCAGAA 2058
||||| ||||.|.| ||| |||| .||||.|
BL02462 2286 TAAACCTTATAAAACTTTAGATGTACAAA----AAG--TATCTTCCAGCA 2329
BSNT_05451 2059 AA--------------------------AGATCAAGAA-----AAATTAA 2077
|| ||||.||||| ||.|.||
BL02462 2330 AACAATATAAAGGGATTATCGTTGAGGTAGATAAAGAAGTCAGAACTCAA 2379
BSNT_05451 2078 TTAGAGCATTCTCTCAACTGATTAACA-AATATCAAAATTTAAAAATGAA 2126
||||||.||.|| |.|| ||||| |.||| |||||
BL02462 2380 ------CATTCTTTCTAC-----AGCAGAATAT--ATATT----AATGA- 2411
BSNT_05451 2127 GCTTTATATTATTGGTGACGGTATCTTAAAGGGAACTTTAAATGATTTGG 2176
|||||||.| |.||| ||| |..||.|||..|
BL02462 2412 ----TATATTAAT----AGGGT---------GGA----TTGATAATTCAG 2440
BSNT_05451 2177 --TTGAAACATTGGGACTAGAAGAAAGT----GTTATATTCACTGGACA- 2219
|||||| |||| ||.||| ||| ||.|.||.||..|||.|
BL02462 2441 CATTGAAA-ATTG----TAAAAG--AGTATCAGTCACATCCAGAGGATAC 2483
BSNT_05451 2220 ----------------------AATGAAAAATCC---------------- 2231
|||||||||.||
BL02462 2484 AGAAAAGCAATCTGCGATAAAGAATGAAAAAGCCAAAATTAAGCGCAAAA 2533
BSNT_05451 2232 --------------------ATTTTTCTTG----------------ATT- 2244
|||.|||..| |||
BL02462 2534 ATTATAAAAAACACTCAAAGATTATTCAGGGGCTGGAGAACAGAACATTA 2583
BSNT_05451 2245 -----AATAAAGCTG-ATTGTTTCG----TTTTA--------------TC 2270
|||||||.|| |||..|||| |.||| |.
BL02462 2584 GAAGAAATAAAGATGAATTTATTCGCGACTATTACAAATGGCGAAAATTA 2633
BSNT_05451 2271 TTCTAATCATG-----AAGGCCAGCC-AATGGTGTTGTTAGAAACGCTTG 2314
|.| |||| || |||.|.|.|| ||| ||||..||
BL02462 2634 TAC-AATC-TGGACCAAAGCCTATCCTAAT------------AACGGGTG 2669
BSNT_05451 2315 T-ACTAAATA--AAC----CAATAATT----GCTACTGACATTG-CAGGG 2352
| |..||||| ||| .||.|||| |.||| ||||| ||..|
BL02462 2670 TAAAGAAATATCAACTGCTGAAGAATTTAACGATAC---CATTGTCATTG 2716
BSNT_05451 2353 TC--TAGAAGC----------ATTTTAGAAGATGGGTATGGTA-CGCTTG 2389
|| .|.|||| | ||||| |||.||..|| ||.||
BL02462 2717 TCAAAAAAAGCCATAAGACAAA----AGAAG--GGGAATACTACCGGTT- 2759
BSNT_05451 2390 CTCCGAATGATGTAGATGGA----------------------------CT 2411
|| |||.||||||| ||
BL02462 2760 CT-------ATGCAGATGGAAAAGCAATTGGATGGTTGGACTCTAGAGCT 2802
BSNT_05451 2412 TTT----TT----------CTGAAATGGAAAAATTCGTGTTAGATAACTC 2447
||| || |||..||.|.||.|..| |||.||.|
BL02462 2803 TTTAATATTATAGAAGAGCCTGTCATTGCAAGAAGC-----AGAGAAGT- 2846
BSNT_05451 2448 GGAAGACA--GGGGTAGGGCA-TTAA---ATAAGGA-TTTAAATTATAAT 2490
|.||.||| |.|.|.|.|.| |||| ||...|| ||||.| ||||||
BL02462 2847 GAAATACAATGCGATTGTGAACTTAAGCGATGCTGACTTTATA-TATAAT 2895
BSNT_05451 2491 AAA-----AGATTCA-----------------AGAGATTTGACTA-CGAA 2517
||| .||||.| |||| ||||| |.||
BL02462 2896 AAACCTTTTGATTTACCTGGATGTACACCTATAGAG----GACTATCAAA 2941
BSNT_05451 2518 AATTACAATCATCAAGCAAT-GAAAATGTTTTATAGG-----------GA 2555
|||| ||||.|.||||.|.| ||||.||||..|.|.| ||
BL02462 2942 AATT-CAATGAACAAGAAGTGGAAATTGTTGAAGAAGCTCTTACACAAGA 2990
BSNT_05451 2556 AG---TTTGTTCCGAAGAAGT-TTAA------------------------ 2577
|| .||.||.|.|||.||| ||||
BL02462 2991 AGGCACTTATTGCAAAGCAGTCTTAAATAATAAAGTGTTGGGGTGGATAG 3040
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3041 GACGCAAATCTTTAAATGTAATTGAGCCTCCTGGAATAAAAGTAGGTAAG 3090
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3091 ACTCTTGTTCCTTATCCATCTGAATGTAACTACAACTTTGTTAATATGGG 3140
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3141 CAGACTCTCCCCTGAAAAAGGGCAAGATAATCTAATAAAAGCTTTCCATA 3190
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3191 CTCATATTCAGAGTTATCCTGATAGCAGGCTTTATATTTTAGGGGATGGT 3240
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3241 CCTTTAAGGAAAGATCTCCAAAAAATAGTGGACAGTTTGGAACTTCAAGA 3290
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3291 TTACGTCTATCTGATGGGACAACTGGAAAATCCGTTTGGTTTCATGAAAA 3340
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3341 TGTGCGACTGTTTTGTACTGTCTTCCCATTATGAAGGACAACCAATGGTA 3390
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3391 TTATTAGAGGCCATGACTTTAGGAATGAGAATATTGGCAACTGACATTAT 3440
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3441 TGCCAATAGAACAGTTTTAGAAAACGGCAGATACGGAACCTTAGTAGATG 3490
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3491 ATAGTATAGCCGGTCTTGAAAATGGTTTAAAAGCAGTAAGAACAGAGATT 3540
BSNT_05451 2577 -------------------------------------------------- 2577
BL02462 3541 AATACTGTTATGCAAGCTTTTGATTATAATGAGTATAATAAAAAAGCTAT 3590
BSNT_05451 2577 ---------------------------- 2577
BL02462 3591 GGATACCTTCTACAAAGTTTTGAACTAA 3618
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