Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03693 and BL02455
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_03693___yqhB.1.5803.seq
# -bsequence dna-align/BL02455___yqhB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03693___yqhB-BL02455___yqhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03693___yqhB-BL02455___yqhB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03693___yqhB
# 2: BL02455___yqhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1384
# Identity: 925/1384 (66.8%)
# Similarity: 925/1384 (66.8%)
# Gaps: 140/1384 (10.1%)
# Score: 2943.0
#
#
#=======================================
BSNT_03693___ 1 ATGCCTTCCTTGGAGAAGGCAGTTGTTTTGGAATTTGTCAATTTACTAGC 50
||||| |||.|.|||..|| ||| ||
BL02455___yqh 1 ---------TTGGA----------GTTATTGAAGCTG---ATT-----GC 23
BSNT_03693___ 51 AGTCGC-----TATTCTTATTTTGTTAACAGGATTTTTTGTTGCCGTAGA 95
|||.|| ||.||..|||| ||.||.|||||.||.||.||.||
BL02455___yqh 24 AGTAGCAGGATTAATCGCATTT-----ACGGGCTTTTTCGTCGCGGTCGA 68
BSNT_03693___ 96 ATTTTCAATCGTAAAAGTGCGGCGATCCAA--------AATTGATCAGCT 137
|||..|.|||||.|||||..||||..|.|| ||||||||| |
BL02455___yqh 69 ATTCGCCATCGTCAAAGTAAGGCGGACAAAGATCGACCAATTGATCA--T 116
BSNT_03693___ 138 TGTCGCAAAAGGAAAGAAAGGTGCTAAAGCGGCAAAGCATGTCATCACTC 187
| ||.|| |||.||.||.|||...||.|||||..|.||.|.|.|.|
BL02455___yqh 117 T----CAGAA--AAAAAAGGGCGCTCTTGCCGCAAAAGAAGTGACCTCGC 160
BSNT_03693___ 188 ACCTTGATGAATATTTATCAGCCTGTCAGCTGGGCATCACAGTCGCAGCC 237
|||||||.|||||.||.||||||||.|||||.||.|||||.||..|.||.
BL02455___yqh 161 ACCTTGACGAATACTTGTCAGCCTGCCAGCTTGGAATCACCGTGACGGCA 210
BSNT_03693___ 238 TTAGGACTGGGATGGCTTGGGGAACCGACTGTGCAAACTCTGCTTCGACC 287
||.||..||||.||||||||.||||||||..||||.||..||||.|..||
BL02455___yqh 211 TTGGGCTTGGGCTGGCTTGGTGAACCGACGATGCAGACCTTGCTGCATCC 260
BSNT_03693___ 288 GCTTTT-TCATAAAGCAGGCTTAAATGAATCGCTTACCCACCTGCTTTCA 336
.||||| |||.|||.| |||||.||.||.|||.||||.||..|.||||||
BL02455___yqh 261 CCTTTTCTCAAAAATC-GGCTTGAACGAGTCGATTACACATATTCTTTCA 309
BSNT_03693___ 337 CTCGTCATCGCATTTTTAGCGGTTACGTATTTAAATGTCGTTATCGGGGA 386
.|..|...|||.||||||.|.|||||.|||.|.|||||.||..||||.||
BL02455___yqh 310 TTTTTGGCCGCTTTTTTATCAGTTACTTATCTCAATGTTGTCGTCGGAGA 359
BSNT_03693___ 387 GCTGGCGCCAAAGAGTTTCGCCATTCAAAAAGCAGAAAGCATTACCTTGT 436
||||||||||||.|...||||||||||||||||.||.|.|.||||..||.
BL02455___yqh 360 GCTGGCGCCAAAAACGATCGCCATTCAAAAAGCGGAGACCGTTACGCTGC 409
BSNT_03693___ 437 TGTTCGCTAAACCGCTTATTTGGTTTTATAAGATCATGTTTCCATTCATT 486
|.||.||..|.|||.|.||.||||||||||..|||||||||||.||.||.
BL02455___yqh 410 TTTTTGCACAGCCGATGATCTGGTTTTATAGAATCATGTTTCCTTTTATA 459
BSNT_03693___ 487 TGGCTGTTGAACCACTCTGCCCGATTGATTACAGGAGTGTTTGGGCTGAA 536
||||||.|.||.||.||.|||||..||||.|||.|..||||.||.|||||
BL02455___yqh 460 TGGCTGCTCAATCATTCAGCCCGCATGATCACAAGTCTGTTCGGCCTGAA 509
BSNT_03693___ 537 GCCGGCATCAGAGCACGAGCTGGCATATACAGAGGAAGAACTTCGGGTCC 586
||||.|....||.|||||..||||.|||.|.|||||||||||.||....|
BL02455___yqh 510 GCCGACCGGTGAACACGAATTGGCCTATTCGGAGGAAGAACTGCGAACGC 559
BSNT_03693___ 587 TATTGGCTGAAAGCTATAAAAGCGGCGAGATCAGAAAAAGTGAATTAAAG 636
|.||..|||||||||||..||||||.|||||.|...|||.||||||.||.
BL02455___yqh 560 TTTTATCTGAAAGCTATCGAAGCGGGGAGATTAACCAAAATGAATTGAAA 609
BSNT_03693___ 637 TACATGAATAATATCTTTACCTTTGATAAACGAATGGCAAAGGAAATTAT 686
||..|.||.|||||.||||..||.||..||||.|.||||||.||||||||
BL02455___yqh 610 TATGTAAACAATATTTTTAAATTCGACGAACGTACGGCAAAAGAAATTAT 659
BSNT_03693___ 687 GGTGCCGCGAAATGAAATG---GTCAGTTTGTCACTAGATGAAGACTCCA 733
|||||||||.||||||||| ||| ||.||.||.||.|| ||
BL02455___yqh 660 GGTGCCGCGCAATGAAATGACCGTC---TTATCTCTTGACGA------CA 700
BSNT_03693___ 734 -TTTCAAATCTTCAG-GAAACAG----TCAAGCAAACAAAATATACACGG 777
|||.||| ..|| |||.||| ||||..||||.||..|.||.||.
BL02455___yqh 701 GTTTAAAA---AAAGCGAAGCAGCTTATCAAAGAAACGAAGCACACCCGC 747
BSNT_03693___ 778 TACCCAGT--TGTAAGGGAGGATAAAGATAACGTTATTGGCGTGATTAAT 825
|.|||.|| ||.| |||.||.||||||.||.|.|..||..||||.|||
BL02455___yqh 748 TTCCCCGTCATGGA--GGAAGACAAAGATCACATCACCGGAATGATCAAT 795
BSNT_03693___ 826 ATGAAAGAAGTGCTGTTTTC----CATGCTGACGAAAGATTTTTCAATCA 871
||.||||||.|||||.|..| |.|||.|..||| ||||| |..
BL02455___yqh 796 ATAAAAGAACTGCTGCTGGCGGAGCTTGCAGGGGAA----TTTTC--TTT 839
BSNT_03693___ 872 AGAAGCATCAAATTG----AACCTTTCGTACAGCCCGTTATCCATGTCAT 917
||||.|| ||||.| |.||.|...|.||.||.|||||||||||.||
BL02455___yqh 840 AGAAACA--AAATCGCTAAAGCCATATATCCATCCGGTTATCCATGTGAT 887
BSNT_03693___ 918 TGAGACGATTCCTATTTATAAACTA-CTGCTG------AAAATGCAAAAG 960
|||.||||||||..| ||| |.|||| ||||||||.||.
BL02455___yqh 888 TGAAACGATTCCCGT-------CTACCAGCTGTTCGTCAAAATGCAGAAA 930
BSNT_03693___ 961 GAACGCACTCATATGGCGATCCTCATAGATGAATATGGCGGGACGTCCGG 1010
||.|..||.|||||||||||.|||.|||||||.||||||||.||.||.||
BL02455___yqh 931 GAGCATACACATATGGCGATTCTCGTAGATGAGTATGGCGGAACATCGGG 980
BSNT_03693___ 1011 TTTGGTCACTGTCGAGGATATTATCGAAGAAATTGTAGGAGAAATCCGTG 1060
|.|.||.||.||.|||||||||.||||.|||||.||.||.||.||.||.|
BL02455___yqh 981 TCTTGTGACGGTTGAGGATATTGTCGAGGAAATCGTCGGCGACATTCGCG 1030
BSNT_03693___ 1061 ATGAATTTGATGCGGATGAAGTGCCTCATATCCGC-------GAACTTGG 1103
|||||||.|||.|.||.|||| ||||.|| .||||.|.
BL02455___yqh 1031 ATGAATTCGATACTGAAGAAG-------TATCTGCTGTTCAGAAACTCGA 1073
BSNT_03693___ 1104 AAAGGATCATTACTTGTTAAATGCAAAATTATTAATCAGCGATGTTAACA 1153
|.|.||.||||||.|..||||.||.|||.||.|..|||||||.||.|||.
BL02455___yqh 1074 AGATGACCATTACATCCTAAACGCGAAAGTACTGGTCAGCGACGTAAACG 1123
BSNT_03693___ 1154 GCCTGCTTGGAACCGATTTATCAGAGGCTGAAGTAGACACCTTGGGCGGC 1203
.|||||||||||...||||||||||.|..||..|.||.||..|.||||||
BL02455___yqh 1124 ACCTGCTTGGAATTCATTTATCAGATGAGGAGATTGATACAATCGGCGGC 1173
BSNT_03693___ 1204 TGGTTTTTGACACAAAACAT--AGATGCTGAGCCTGAAAGTACCATAGAA 1251
|||.|..||||.||.||.|| ||| || .||||.|.||..||.||.|||
BL02455___yqh 1174 TGGATGCTGACGCAGAATATTGAGA-GC-AAGCCCGGAACGACGATCGAA 1221
BSNT_03693___ 1252 TATGATGGCTACTCTTTTAAGGTAAAAGACATCAACAGCCATC---ACAT 1298
..|||.||.|||..||||||.||||||||.||..||.|.|||| .|.|
BL02455___yqh 1222 AGTGAAGGATACCGTTTTAAAGTAAAAGAAATGGACGGACATCGAATCGT 1271
BSNT_03693___ 1299 TTTATTTATAGAAGTTAAAAAA---GCTGAATAG 1329
|..|.|| ||.|||.||||| |||.||
BL02455___yqh 1272 TGCAGTT---GAGGTTGAAAAAACCGCTTAA--- 1299
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