Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05577 and BL02453
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05577___ywoA.1.5803.seq
# -bsequence dna-align/BL02453___bcrC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05577___ywoA-BL02453___bcrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05577___ywoA-BL02453___bcrC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05577___ywoA
# 2: BL02453___bcrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 648
# Identity: 375/648 (57.9%)
# Similarity: 375/648 (57.9%)
# Gaps: 135/648 (20.8%)
# Score: 927.0
#
#
#=======================================
BSNT_05577___ 1 TTGAACTA----CGAAATTTTTA-AAGCAATCCATGGACTATCTCATCAC 45
|||||||| | |||||| |.|| ||.|||..|.||.|..|.|||
BL02453___bcr 1 TTGAACTATTGGC----TTTTTACACGC-ATTCATCAATTAGCAAACCAC 45
BSNT_05577___ 46 AA-TTCAGTTCTCGATTCCATTATGGTCTTCATAACGGAATATGCCAT-- 92
|| ..|| |.||.|||..|...|||.|.||.||.||.|||.|.||.||
BL02453___bcr 46 AACGACA-TCCTGGATGGCGCCATGATTTTGATTACAGAAAAAGCGATTT 94
BSNT_05577___ 93 -TATCGCCTATGC---CCTTATCCTATTGGCAATCTGGCTGTTTGGGAAC 138
||| .||||| |.||.|.||.||| ||||||.|.||.||.|||
BL02453___bcr 95 ATAT---GTATGCGCTCATTTTGCTTTTG---ATCTGGATATTCGGAAAC 138
BSNT_05577___ 139 AC------ACAAAGCAGAAAACATGTGCTATACGCAGGCATCACAGGAAT 182
| |.||| |.||| .||.||..|.||.||..|.||.||.||
BL02453___bcr 139 -CGTTCTTATAAA----ATAAC-CGTTCTTCAGGCCGGTGTGACGGGTAT 182
BSNT_05577___ 183 TGCAGGCCTTGTGAT-------CAACTATTTGATTACGCTTGTTTATTTC 225
| ||..||| .||.||||||.|..|..|.|||||.|..
BL02453___bcr 183 T-------TTCGGATTGGCGGCAAATTATTTGCTGTCATTGGTTTACTAT 225
BSNT_05577___ 226 GAACCGCGCCCGTTCGTTGCGCATACA-GTGCATACACTGATTCCGCATG 274
||.|||.|.||.||.||.||.||| || |||.|...|.||||||..||||
BL02453___bcr 226 GAGCCGAGGCCATTTGTCGCTCAT-CATGTGGACGTATTGATTCACCATG 274
BSNT_05577___ 275 CTGCGGATGCTTCATTTCCAAGTGACCACACGACAGGCGCATTAGCGATT 324
||||.||.||.||||||||.||.||.||.||.||.||.||.|||||.|||
BL02453___bcr 275 CTGCCGACGCCTCATTTCCCAGCGATCATACAACCGGGGCGTTAGCCATT 324
BSNT_05577___ 325 TCTATTGCGAT---GCTTT-TCAGAAACCGCAAAATCG---GCTGGCCGC 367
||.||.||..| ||||| || |.||.|||||.| ||||.|.|.
BL02453___bcr 325 TCGATCGCTTTTTGGCTTTATC----ATCGGAAAATTGGAAGCTGCCTGA 370
BSNT_05577___ 368 TTGTCATTTTTGGGCTTTTGACAGGCTTTTCGAGAATTTGGGTGGGACAT 417
||| .|||.|||.|.|||||.||||||||..|.||||||||.|||||.
BL02453___bcr 371 TTG---CTTTCGGGTTATTGACGGGCTTTTCCCGTATTTGGGTCGGACAC 417
BSNT_05577___ 418 CACTATCCGGTAGATGTATTGGGCAGCCTCGTTATCGCCATCATTATCGG 467
|||||.||.||.||.||||||||||||.|..|..||| |.||||..|
BL02453___bcr 418 CACTACCCTGTTGACGTATTGGGCAGCATTTTGGTCG----CTTTATTCG 463
BSNT_05577___ 468 GTTC----CTTTTCTTTAGATTTTCAGATCTGCTTCGCCCGTTCGT---- 509
..|| .||.|.||||||||.|| |.|||..||
BL02453___bcr 464 TATCACTTGTTATGTTTAGATTCTC------------CACGTATGTGCAG 501
BSNT_05577___ 510 -CGATTTGGTCGTGA--GGA---------TCTATGAAGCCATTATCAAT- 546
||.||| .||| ||| ||||||| |||.||
BL02453___bcr 502 CCGCTTT----TTGAACGGATCATTTCACTCTATGA-------ATCGATC 540
BSNT_05577___ 547 ------AAACTGACGAAAA-----AACCA-ACCGATCAAAATTTCTAA 582
|||.|| ||.||| |.||| |.||.|..||
BL02453___bcr 541 TTGCGGAAATTG-CGGAAAGCGGTATCCAGAACGGTATAA-------- 579
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