Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05546 and BL02450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05546___ywpF.1.5803.seq
# -bsequence dna-align/BL02450___ywpF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05546___ywpF-BL02450___ywpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05546___ywpF-BL02450___ywpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05546___ywpF
# 2: BL02450___ywpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity: 285/455 (62.6%)
# Similarity: 285/455 (62.6%)
# Gaps: 85/455 (18.7%)
# Score: 843.0
#
#
#=======================================
BSNT_05546___ 1 ATGAAAACCTTTAAACTGGTTGACCTGAATGTGGAACGAGTGGACAAGGA 50
|||||||||||||..||..||||..|.||..|.|..|| |.||||
BL02450___ywp 1 ATGAAAACCTTTAGGCTTATTGATTTAAAAATTGTCCG------CCAGGA 44
BSNT_05546___ 51 AGAACA-ATCAA------TCGAACAGTTTCCCCTTATTGACGGACTGATT 93
.| ||| .|||| |.||..||||.||.||.||.|||||.||.||.
BL02450___ywp 45 TG-ACACTTCAAAGCGGCTTGAGGAGTTCCCGCTGATCGACGGCCTTATC 93
BSNT_05546___ 94 ATAAATAAAGAAGACGGTGAAAATCACTGGCTGATTGAGGCGCTTGTACA 143
||.|||||.||||||||.|||||.||||||.||.||||.|..||.||...
BL02450___ywp 94 ATTAATAAGGAAGACGGAGAAAACCACTGGATGGTTGAAGGTCTGGTTTC 143
BSNT_05546___ 144 GAAAGAACATCTGTCTTTTTTTGAACAGCTTCT--AAACAGCCAATCTGA 191
.||||||.|.|.||.||||||.|||.|.||.|| |...||.||| .||
BL02450___ywp 144 TAAAGAATACCGGTATTTTTTCGAATATCTCCTTCAGGAAGGCAA--AGA 191
BSNT_05546___ 192 AGCCAAAGTATTTGTAACGATCACGAAAAAAAGCAATCGCCCCGCCCAGC 241
||..||||.||.||||||||||||||||||||||||.|||||.||.||||
BL02450___ywp 192 AGTGAAAGCATATGTAACGATCACGAAAAAAAGCAACCGCCCAGCACAGC 241
BSNT_05546___ 242 TGACAGC--AGCAGTGAAAAATATC---GTCAAGCTGGAAGAAAGCATCC 286
||..||| || ||.|||||.||| || |||.| |..|||||
BL02450___ywp 242 TGTTAGCGAAG--GTCAAAAACATCACGGT---GCTCG--GCGAGCAT-- 282
BSNT_05546___ 287 AGGTTTTACTCT--ATGGAC----AAATGGTCA---CAA-------GAAA 320
||||...||| .||||| ||||||||| ||| ||||
BL02450___ywp 283 --GTTTCCGTCTTATTGGACGGCAAAATGGTCAGCTCAAAGCTGAGGAAA 330
BSNT_05546___ 321 ACAGCAGGGCACTGAAACCATTCTCGAGTCCCTTG----------TAAAA 360
|||.|.||.|..||| ||| |.|||
BL02450___ywp 331 -------GGCTCCGACAAGATT----------TTGGAAGATTTAATGAAA 363
BSNT_05546___ 361 GAGGGCTATACAGGAACAAAA----CTCATTGAAGCATTTAAGCAAAAGT 406
||.||.|||.|.|| |.| ||..|||||||||||||||||||..
BL02450___ywp 364 GAAGGATATTCCGG----AGATCGGCTTCTTGAAGCATTTAAGCAAAATA 409
BSNT_05546___ 407 TATAA 411
|||||
BL02450___ywp 410 TATAA 414
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