Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05537 and BL02449
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05537___ywqA.1.5803.seq
# -bsequence dna-align/BL02449___ywqA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05537___ywqA-BL02449___ywqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05537___ywqA-BL02449___ywqA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05537___ywqA
# 2: BL02449___ywqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2880
# Identity: 2077/2880 (72.1%)
# Similarity: 2077/2880 (72.1%)
# Gaps: 225/2880 ( 7.8%)
# Score: 7316.0
#
#
#=======================================
BSNT_05537___ 1 ATGGCGAGTCTTAAAGAAATTCTCATCCACGTCGAACAAATGGAAGATGG 50
||||||||||||||.|||||..|.||.||.||||||||....|||||...
BL02449___ywq 1 ATGGCGAGTCTTAAGGAAATCGTAATACATGTCGAACAGTCAGAAGACTA 50
BSNT_05537___ 51 GTCATTTACGCTCTCAGCCTTTGATGA---GAATGAGCAGCCTCTTCCCT 97
..|||||| |.|.|.|.|.|.|||| |.||.|.||| ||.|.|
BL02449___ywq 51 TACATTTA---TTTTATCTTGTCATGACGGGGATCATCAG----TTTCTT 93
BSNT_05537___ 98 AC----AACCATATGAAAAAGCATTTGTTCCAATGGCATGAATCCTCATT 143
|| ||..|.|||.|||.|||||||||.||.|||||.|||||.||.||
BL02449___ywq 94 ACGCGAAATGAAATGGAAAGGCATTTGTTTCAGTGGCACGAATCGTCTTT 143
BSNT_05537___ 144 TTACGGAACCTTTCTAGAGGATGTCAGCTT-CATCGGGACGACTGCTGTC 192
|||||||||.|||||.|||||.|.|.|.|| .|| ||..||||.||.
BL02449___ywq 144 TTACGGAACATTTCTCGAGGAAGCCGGTTTAGAT----ACCCCTGCGGTT 189
BSNT_05537___ 193 CTGCTATCTCCATGGATGACTGTAGAGCTTCTCGGCAAAAACTCGTTCAA 242
|||||.||.||.||||||.|.||.||..||||||||||||||||.||.||
BL02449___ywq 190 CTGCTGTCCCCGTGGATGGCGGTCGAATTTCTCGGCAAAAACTCATTTAA 239
BSNT_05537___ 243 CTCATTCAGCTCCGTGCA-GCTTACAGAAGAAACAGAGCCGCTGATCGAG 291
.|||||||||..|.| || .|||||.||.|||||.||.||..||||..|.
BL02449___ywq 240 TTCATTCAGCGACAT-CATCCTTACTGAGGAAACTGAACCTTTGATGAAA 288
BSNT_05537___ 292 GCGGCCTCGACCATCTATGAATTTATCGCGGACGGCGATTTTCTGCCTGA 341
.||||.||.|||||.|||||.||||||||.||.|..||.|||||.||.||
BL02449___ywq 289 ACGGCTTCCACCATTTATGAGTTTATCGCAGATGAAGACTTTCTTCCCGA 338
BSNT_05537___ 342 CTATGACGCATGGA-----CAAACGGTGTTTTTCGCTGGAAGGACCGCGA 386
||||||.||||||| .|||.|.|| |||||||| .||
BL02449___ywq 339 CTATGAAGCATGGAAGCAGGAAATGCTG-----CGCTGGAA------AGA 377
BSNT_05537___ 387 TAA------TATACTGGAGGGCTTTACTGCGGAATGGTTTTC---CGCTG 427
||| .||..||||.||||.|||.||.||||||||||| |||||
BL02449___ywq 378 TAAAGAAGGGATTTTGGAAGGCTATACAGCCGAATGGTTTTCACACGCTG 427
BSNT_05537___ 428 CCGTACAGGATTACATCCAATACGACGATGAACT----GCGGGAGAAATG 473
.|| |.||.||||||.|.|||.|.||.|||.| || .|||||
BL02449___ywq 428 TCG---AAGACTACATCAACTACAATGACGAATTAAAAGC----AAAATG 470
BSNT_05537___ 474 GGAA----------CATATCAAGGAGAAATCGCCTGCGGTTACGTCATTC 513
|||| ||.|| ||.||.||.||.||..||||.
BL02449___ywq 471 GGAATCGATTGTCGCACAT----------TCCCCCGCAGTCACCACATTT 510
BSNT_05537___ 514 CGCGGCCATTTTCTTGATGAAGAGGATTTTCTGGAAGGCATTGGCTGGAT 563
|..||.|||||||||||||||||.||||||||.|||...|||||||||..
BL02449___ywq 511 CAGGGACATTTTCTTGATGAAGACGATTTTCTTGAAACGATTGGCTGGCA 560
BSNT_05537___ 564 TGACGACCAATCT---CCATTTACTGTCGGCTTGCGCTTAAATGAACCGG 610
|||..||| || ||.|||||.|||||..|.||||||||||||||.|
BL02449___ywq 561 TGAAAACC---CTGTGCCGTTTACCGTCGGACTCCGCTTAAATGAACCTG 607
BSNT_05537___ 611 ACTTTGACGGAGACGATTGGAAAATTGAGATGTTTTTACGTGATAAAAAG 660
|||||||||||||||||||||||||.||..|||||||.||.||.|||||.
BL02449___ywq 608 ACTTTGACGGAGACGATTGGAAAATCGAACTGTTTTTGCGCGACAAAAAA 657
BSNT_05537___ 661 AGCGGTGCTGTAGAATTTTTTGACAGGC-TGAAGAGCCTCAAAAAATCGT 709
|||||.||..|..|.||.||||| |||| ||||.||.||.||||||||||
BL02449___ywq 658 AGCGGAGCCATTCAGTTCTTTGA-AGGCTTGAACAGGCTGAAAAAATCGT 706
BSNT_05537___ 710 GGCAGGCATACAGC-GATAAAATCGCGCGTGAGCAGGACCGCTTTCACAG 758
||||||||||| || ||||||||||..||.||.||.|||.|.||.|.|..
BL02449___ywq 707 GGCAGGCATAC-GCTGATAAAATCGACCGAGAACAAGACAGGTTCCGCCA 755
BSNT_05537___ 759 AACGGTTCCGTGGCTGTCATTTGATTCCGGGACAACGCTGATCTCGGAGG 808
||..||.||.||||||.|..|.||.||.|||||..||||..|..||||.|
BL02449___ywq 756 AATCGTGCCCTGGCTGACGATCGAATCGGGGACGTCGCTTTTAACGGAAG 805
BSNT_05537___ 809 AAGAAGCCTGGATCTTCCTGTCAGAAGCAAGTGAGACGCTTGTCGATATG 858
|.|||||.||||||||||||||.|||||.||.||.||.||||||...|||
BL02449___ywq 806 AGGAAGCATGGATCTTCCTGTCCGAAGCTAGCGAAACACTTGTCAGCATG 855
BSNT_05537___ 859 GGGGTAGAAATCCTCCTGCCGTCCTGGTGGCAGATTGTCAGAGACAGCAA 908
|||.|.|||||.||.||||||||.||||||||.||.||.|||||||||||
BL02449___ywq 856 GGGATTGAAATTCTGCTGCCGTCATGGTGGCAAATCGTGAGAGACAGCAA 905
BSNT_05537___ 909 CATGATGCTGAAAGCAAAGGTGTCTTC--CTCCCCGCGTGGAGAGTCATT 956
.|||.|||||||||||||.|||||.|| |||||||| ||.|||||.||
BL02449___ywq 906 TATGCTGCTGAAAGCAAAAGTGTCATCGGCTCCCCGC--GGCGAGTCTTT 953
BSNT_05537___ 957 TGTCGGCATGAATGCACTGCTTGATTTCAACTGGCGGTTTGCGACAAATG 1006
||||||.|||||||||.||.|.||.|||||||||||.|||||.||.||||
BL02449___ywq 954 TGTCGGAATGAATGCATTGATGGACTTCAACTGGCGTTTTGCCACCAATG 1003
BSNT_05537___ 1007 GAATTGAACTGACTGAGGATGAATTTAATGAGCTTGTCGCCAGCAACAGG 1056
||||||||||.||.|||||.|||||..|..||||||||||||..||.||.
BL02449___ywq 1004 GAATTGAACTCACAGAGGAAGAATTCGAGCAGCTTGTCGCCAATAAAAGA 1053
BSNT_05537___ 1057 CGCCTTGTTAATATCCGCGGGCAATGGGTTAAAATCGATCCGCAGTTTAT 1106
||.|||||.|||||.||||||||.|||.|.||||||||.|||.|.|||||
BL02449___ywq 1054 CGGCTTGTCAATATACGCGGGCAGTGGATCAAAATCGACCCGAATTTTAT 1103
BSNT_05537___ 1107 CAAACAGATGAAACGCCTGATGGAAAAAGCAGAATCAGAGGGACTCCACA 1156
||||||.||||||...||||||||....||||||.|||||||.||.||.|
BL02449___ywq 1104 CAAACAAATGAAAAAGCTGATGGAGCGGGCAGAAACAGAGGGGCTTCATA 1153
BSNT_05537___ 1157 TGTCTGATATTCTGGCGCGCGAGCTAATGGATCAGCAGGATGGCGGA--- 1203
|||||||.||.||||||||||||||.|..||.| ||| |||.|
BL02449___ywq 1154 TGTCTGACATCCTGGCGCGCGAGCTGACAGAGC----GGA--GCGAAACC 1197
BSNT_05537___ 1204 CTTGAGGATTCGGATCTGATTGATACATCCGCTTTCGCCGGCATTCAGTT 1253
|..||||||...||||||.|.|||.|.|||||.|||..||...|.|.|||
BL02449___ywq 1198 CGCGAGGATGATGATCTGTTCGATGCTTCCGCATTCAGCGATGTACGGTT 1247
BSNT_05537___ 1254 TGATCTGTCTAAACAGCT------CAGGTCACTGATTCGAAAGCTCACTG 1297
|||.|||||..|.||||| || ||||..|||||||.| |
BL02449___ywq 1248 TGAACTGTCCTATCAGCTGAAAAACA------TGATCAGAAAGCTGA--G 1289
BSNT_05537___ 1298 CC-GCG-GAAAACCTGCCGGAGCA----CGAAGTCAGTCCTTCTTTCAAA 1341
|| ||| ||..|.||.||| .|| || |||||....|.|||..|.
BL02449___ywq 1290 CCAGCGCGATGATCTCCCG--TCATACCCG--GTCAGCAAATATTTTCAC 1335
BSNT_05537___ 1342 GGAACGCTCCGCCCTTATCAGAAATACGGCATGAACTGGCTGCTGTTTCT 1391
||.||||||.|..||||||||.||.||||..|||||||||||.|.|||||
BL02449___ywq 1336 GGGACGCTCAGAGCTTATCAGGAAGACGGTTTGAACTGGCTGATCTTTCT 1385
BSNT_05537___ 1392 GCGGGAAA--GCGGTTTTGGCGCCTGTCTGGCTGACGATATGGGGCTTGG 1439
..|||| ||||.||.||||||||.|||||.||.|||||||||||.||
BL02449___ywq 1386 --CAGAAACTGCGGCTTCGGCGCCTGCCTGGCAGATGATATGGGGCTCGG 1433
BSNT_05537___ 1440 GAAAACGATTCAAATGATCGCCTATTT--CCTTCACGTGAAGGAAAGCGG 1487
.||.||.|||||.|||||||||||||| ||| |..|.||.|||
BL02449___ywq 1434 AAAGACCATTCAGATGATCGCCTATTTCGCCT--ATTTAAAAGAA----- 1476
BSNT_05537___ 1488 CCGG--CAAAAAACGCC-TCATTTGATTATTGCGCCGACATCCGTACTTG 1534
|.|| |||.||||||| || |.|.||.|||||||||||.|||||.||.|
BL02449___ywq 1477 CAGGGACAACAAACGCCGTC-TCTTATCATTGCGCCGACTTCCGTCCTCG 1525
BSNT_05537___ 1535 GCAACTGGCAGCGGGAGCTTCAAACCTTTGCCCCTGATCTGTCTGTCGCG 1584
|.|||||||||||.||.||..|.|||||.||.||.|..|||.|.|..|||
BL02449___ywq 1526 GGAACTGGCAGCGCGAACTCGAGACCTTCGCGCCCGGCCTGACGGCAGCG 1575
BSNT_05537___ 1585 CTCCATTATGGGCCGCGTCGGCC-AAAGGGGGATGA----TTTCGCCGCG 1629
|||||.||.|||||....||.|| ||||| ||| |||
BL02449___ywq 1576 CTCCACTACGGGCCAAAACGCCCTAAAGG----TGAAGCGTTT------- 1614
BSNT_05537___ 1630 CA------TTATGAAAACGCAGACGTGGTGCTCACTTCATACGGTCTGTC 1673
|| |||..||.|.||.||..|.||..|.||.||||||||.||..|
BL02449___ywq 1615 CAGACATCTTACAAAGATGCGGATATCGTCTTGACGTCATACGGCCTCGC 1664
BSNT_05537___ 1674 ACATGCAGATACTGAAGAGCTTTCTTCT-------GTGACATGGAACACG 1716
.||..|.||...|||.|| ||| ||..|.||||||...
BL02449___ywq 1665 CCAATCCGACTTTGACGA-------TCTCAGCAGCGTCGCCTGGAACTGC 1707
BSNT_05537___ 1717 ATCTGCCTTGATGAAGCGCAAAATATTAAAAACGCGCATACGAAGCAATC 1766
|||||||||||.||.||.|||||.||||||||.|||||.|||||.|||||
BL02449___ywq 1708 ATCTGCCTTGACGAGGCCCAAAACATTAAAAATGCGCACACGAAACAATC 1757
BSNT_05537___ 1767 ACGCGCAATCAGGAAGCTGAAGGGGCTTCACCATATCGCGCTGAGCGGCA 1816
.||..|||||||.||||||||.||.||.||.|||||||||||.|||||.|
BL02449___ywq 1758 CCGTTCAATCAGAAAGCTGAAAGGACTGCATCATATCGCGCTCAGCGGGA 1807
BSNT_05537___ 1817 CGCCGATGGAAAACCGGCTGACTGAGCTGTGGTCCATTTTTGACTTCATG 1866
|.||||||||||||||.|||||.|||||||||||.||.|..||.||||||
BL02449___ywq 1808 CTCCGATGGAAAACCGCCTGACGGAGCTGTGGTCAATCTACGATTTCATG 1857
BSNT_05537___ 1867 AATAAAGGCTATCTCGGCAG--TTTGACCGGCTTCCATAAACGCTATGTG 1914
||.||||||||||||||.|| ||.| |.||||||||||.||.|.|||.
BL02449___ywq 1858 AACAAAGGCTATCTCGGAAGCCTTGG--CAGCTTCCATAAGCGTTTTGTC 1905
BSNT_05537___ 1915 CTGCCGATCGAAAAAGACCGGGACGAAAAGAGAATCGGACAGCTTCAGCA 1964
|||||.||||||||||||||.||||||||..|.||||.||||||||||||
BL02449___ywq 1906 CTGCCAATCGAAAAAGACCGCGACGAAAAACGGATCGAACAGCTTCAGCA 1955
BSNT_05537___ 1965 ----ATTAATCCGGCCATTCCTTCTCCGCCGGACGAAACGGGATGAAGAG 2010
||.||.||| ||..|..|..|.|||||.||.|.|||..||||.
BL02449___ywq 1956 GCTGATCAAACCG----TTTTTATTAAGACGGACAAAGCAGGACAAAGAA 2001
BSNT_05537___ 2011 GTCGCGCTTAATCTTCCTGAGAAGCTGGAAGAAAAAGAATTTATCCCGCT 2060
||||||||.|||||.||||||||.|.|||.||||||||.||..|.|||||
BL02449___ywq 2002 GTCGCGCTCAATCTGCCTGAGAAACAGGAGGAAAAAGAGTTCGTTCCGCT 2051
BSNT_05537___ 2061 GTCAGCCGAGCAGGCATCCCTTTATGAGCAGCTCGTCAAAGACACTTTTG 2110
.||.||.||.|||||.||.||.|||||.|||||.||||||||.||.||||
BL02449___ywq 2052 CTCCGCAGAACAGGCTTCACTATATGAACAGCTTGTCAAAGATACGTTTG 2101
BSNT_05537___ 2111 ACCATATGACATCCCTGACCGGCATGCAGCGAAAAGCGCTGATCCTCAGC 2160
|.||||||.||..|||..||||.||||||||.|||||.||.|||.|.|||
BL02449___ywq 2102 AACATATGTCAAGCCTCGCCGGAATGCAGCGCAAAGCTCTAATCTTAAGC 2151
BSNT_05537___ 2161 ATGCTTGGACGGCTCAAGCAAATATGCGATCATCCCGCGCTTTATTTAAA 2210
|||||.||...||||||.|||||.||||..||.||.||.|||||.||||
BL02449___ywq 2152 ATGCTCGGCAAGCTCAAACAAATCTGCGGCCACCCTGCCCTTTACTTAA- 2200
BSNT_05537___ 2211 GGAAGAGCAAAC------CGAGCTGCTGGCCGGCAGATCAGTCAAGCTCG 2254
||||| || ||||||.||...|||.||.|||||||||||||
BL02449___ywq 2201 --AAGAG---ACCGGGAGCGAGCTCCTTAACGGAAGGTCAGTCAAGCTCG 2245
BSNT_05537___ 2255 AAAAATTGCTGGAACTGATGACAG-CGATTCGCGCCCAAA---ACGAAAG 2300
|||||.|||||||.||||.|| || ||||||||| ||| |.|||||
BL02449___ywq 2246 AAAAACTGCTGGAGCTGACGA-AGACGATTCGCG---AAAGCGATGAAAG 2291
BSNT_05537___ 2301 CTGCCTGATTTTCACGCAATACATTCAGATGGGGAACATGATGAAGCGGC 2350
||||.||||||||||.|||||..|...||||||..|.|||||||||||.|
BL02449___ywq 2292 CTGCTTGATTTTCACCCAATATCTCGGGATGGGAGATATGATGAAGCGCC 2341
BSNT_05537___ 2351 TGCTTGAAAAAACGTTCGGGGAACCTGTGCAA-TTTTTAAATGGGAGTCT 2399
||||.||.||..|.|||||.|||||.|| ||| |||.|.||.||.||..|
BL02449___ywq 2342 TGCTCGAGAAGTCATTCGGCGAACCGGT-CAAGTTTCTGAACGGCAGCTT 2390
BSNT_05537___ 2400 CTCCAAGCAAGAGCGGGATACACTCGTTGAGAAATTTCAAAGGAAAGAAT 2449
.|||||||..||.|||||.|.|.|.||.|||.|.|||||||..||.||||
BL02449___ywq 2391 ATCCAAGCTTGAACGGGACAAAATGGTGGAGCAGTTTCAAAACAAGGAAT 2440
BSNT_05537___ 2450 ATCCGACACTGATTCTT-TCACTCAAAGCTGGAGGCACCGGACTTAATTT 2498
.|||||...||| |||| |||.|.|||||.||.|||||.||.||.|||||
BL02449___ywq 2441 TTCCGATTTTGA-TCTTATCATTAAAAGCCGGGGGCACAGGCCTCAATTT 2489
BSNT_05537___ 2499 GACCGCCGCCAATCACGTCATCCATTATGACAGATGGTGGAACCCGGCGG 2548
|||.||||||||||||||||||||||||||||||||||||||.||.||||
BL02449___ywq 2490 GACGGCCGCCAATCACGTCATCCATTATGACAGATGGTGGAATCCCGCGG 2539
BSNT_05537___ 2549 TTGAAAATCAAGCGACTGACCGTGCATACCGCATAGGCCAGGAGCGCTTT 2598
||||||||||||||||.|||||.||.|||.|.||.||.|||.|.||.||.
BL02449___ywq 2540 TTGAAAATCAAGCGACAGACCGCGCCTACAGAATTGGACAGAAACGGTTC 2589
BSNT_05537___ 2599 GTCCACGTTCATAAAATGATTACGACGGGAACAATCGAGGAAAAAATTGA 2648
|||||||||||||||.||||.||.||.||.|||||.||.||||||||.||
BL02449___ywq 2590 GTCCACGTTCATAAACTGATCACCACCGGCACAATTGAAGAAAAAATCGA 2639
BSNT_05537___ 2649 TGTCATGCTTGAATCCAAGCAAACCCTGAACGATCAAATTATCCAAAGTG 2698
....|||||.|||||.||||||.|.||||||||||||||.||||||||.|
BL02449___ywq 2640 CCAAATGCTCGAATCGAAGCAATCGCTGAACGATCAAATCATCCAAAGCG 2689
BSNT_05537___ 2699 AAAACTGGATTACCGAGCTTTCCACACAGGAGCTTGAAGAACTGTTTACA 2748
||||.|||||.|||||||||||....||.||.|||||.||..|.|||||.
BL02449___ywq 2690 AAAATTGGATCACCGAGCTTTCTGAGCATGAACTTGAGGAGTTATTTACC 2739
BSNT_05537___ 2749 TTAAGCGC---------AACAGCGCAATAA 2769
.|.|.||| .||||...||
BL02449___ywq 2740 CTGAACGCTTCGGCTATTACAGGTTAA--- 2766
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