Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03297 and BL02434

See Amino acid alignment / Visit BSNT_03297 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_03297___kduI.1.5803.seq
#    -bsequence dna-align/BL02434___kduI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03297___kduI-BL02434___kduI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03297___kduI-BL02434___kduI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03297___kduI
# 2: BL02434___kduI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 858
# Identity:     625/858 (72.8%)
# Similarity:   625/858 (72.8%)
# Gaps:          60/858 ( 7.0%)
# Score: 2203.5
# 
#
#=======================================

BSNT_03297___      1 ATGGAAAATCGTTATTCTGTACATCCTGAACAAGTAAAACGCTTTACAAC     50
                     ||||||||||||||||||||.|||||.|||||||..|||||.||.|||||
BL02434___kdu      1 ATGGAAAATCGTTATTCTGTTCATCCAGAACAAGCGAAACGATTCACAAC     50

BSNT_03297___     51 AGAGGAGCTTCGC-AGTCATTTCTTAATGGATTCTTTATTTACAGAAAAC     99
                     .|..||||||||| || |||||.|||||.||.||.||.|||...||||||
BL02434___kdu     51 CGCAGAGCTTCGCGAG-CATTTTTTAATAGAGTCATTGTTTGTTGAAAAC     99

BSNT_03297___    100 AAACTTACGATGTATTACTCACATGAAGACCGGGTTGTCATCGGCGGAGC    149
                     |||||.|..||||.|||.||.|||||||||.||||.||.|||||||||||
BL02434___kdu    100 AAACTGAATATGTTTTATTCGCATGAAGACAGGGTCGTGATCGGCGGAGC    149

BSNT_03297___    150 GGCTCCAGGGCAAAGTGAACTGA--------AGCTTGATGCAGGTGATTT    191
                     .|.||||  |.||||      ||        .|||.|||||.||.|||||
BL02434___kdu    150 CGTTCCA--GTAAAG------GAGTCCATAGCGCTCGATGCCGGCGATTT    191

BSNT_03297___    192 TATAAAAACAGACTTCTTTTTGGAACGGCGTGAAATCGGGATTATTAATG    241
                     |.|||||||.||||..||..|.||||||||.||||||||||||.|.||||
BL02434___kdu    192 TTTAAAAACGGACTATTTCCTAGAACGGCGCGAAATCGGGATTGTGAATG    241

BSNT_03297___    242 TCGGCCAGCCTGGCGCTGTCAGGGTTGGCGATGATGAATATGTGCTTCA-    290
                     |||||.||||.||.||.||.|..||.||.|||||.|||||.||.||..| 
BL02434___kdu    242 TCGGCAAGCCCGGTGCGGTTAAAGTCGGTGATGAAGAATACGTACTGGAG    291

BSNT_03297___    291 AACAAAGGATTTTCTCTATATCGGAATGGGCAATCAGGATGTATCGTTTC    340
                     .||||| ||.|||||.||||||||..||||.|||.|.||.||    ||||
BL02434___kdu    292 CACAAA-GACTTTCTGTATATCGGCCTGGGAAATAAAGACGT----TTTC    336

BSNT_03297___    341 ----CAAGCCTGAA------CGGGGAAAAAGCGAAGTTTTACTTCGTCTC    380
                         |||||.||||      ||||      ||.||.|||||.|||.||||
BL02434___kdu    337 TTCTCAAGCTTGAATGAAGGCGGG------GCCAAATTTTATTTCATCTC    380

BSNT_03297___    381 CGCTTGCGCCCA-CAAAAGCTATCCGACACAAAAAGCCGCCCTAGCTGAA    429
                     .||....||.|| |||||| ||||||...||||||||..|.||..|.||.
BL02434___kdu    381 GGCGACGGCACACCAAAAG-TATCCGGTGCAAAAAGCTTCTCTTTCAGAG    429

BSNT_03297___    430 CTGACACCGGACCGCCTTGGTGATGATGCAGCGTCTAATGTCAGAAGTCT    479
                     ||..||...||.|...|.||.||.||.||..|.||.|||||..|.|.|||
BL02434___kdu    430 CTCCCATACGATCATTTAGGAGAAGAAGCCTCTTCAAATGTTCGTAATCT    479

BSNT_03297___    480 GTACAAAGTTATTCAT-CAGGATGGCATTAAAAGCTGTCAGCTGATGATG    528
                     .||||||||.|||||| || ||.||||||.|||||||.||||||||||||
BL02434___kdu    480 ATACAAAGTGATTCATGCA-GACGGCATTCAAAGCTGCCAGCTGATGATG    528

BSNT_03297___    529 GGAATAACGATGTTAGATCAAAACAACAACTGGAATACCATGCCAGCACA    578
                     ||.||.|||.|..|.||.|..||.||||..|||||.||.|||||.||.||
BL02434___kdu    529 GGCATTACGTTTCTTGAACCTAATAACACATGGAACACAATGCCTGCGCA    578

BSNT_03297___    579 CGTTCATGACCGTCGGATGGAGGCTTATCTTTATCTGGATCTTGAAAAGG    628
                     .||.||.|||||.||||||||||.|||.||.|||||.|||||||...|||
BL02434___kdu    579 TGTCCACGACCGGCGGATGGAGGTTTACCTGTATCTTGATCTTGCTGAGG    628

BSNT_03297___    629 ATTCAAAGGTATTTCATTTCATGGGCCAGCCGGAC-GAAACACGCCATCT    677
                     ||.|||||||.|||||||||||||||.|.|| ||| ||.||.||.|||||
BL02434___kdu    629 ATGCAAAGGTGTTTCATTTCATGGGCGAACC-GACGGAGACCCGGCATCT    677

BSNT_03297___    678 TGTTGTTGGAAATGAGCAGGCTGTCCTTTCTCCCGCTTGGTCTATTCATT    727
                     |||.||.||.||.||.|||||||||.||||.|||||.||||||.|.||.|
BL02434___kdu    678 TGTCGTCGGGAACGAACAGGCTGTCATTTCACCCGCGTGGTCTGTCCACT    727

BSNT_03297___    728 CTGGCGCAGGAACATCAAACTATAGCTTTGTGTGGGCGATGGCTGGAGAA    777
                     |.|||.|.||.|||||.|||||..|||||.|.|||||||||||.||||||
BL02434___kdu    728 CGGGCTCCGGCACATCCAACTACTGCTTTATATGGGCGATGGCCGGAGAA    777

BSNT_03297___    778 AATTACACATTTACGGACATGGAT-CTCATTCCGATGGATG------GGC    820
                     ||.||||||||||.|||||||||| || .|.||||||.|||      || 
BL02434___kdu    778 AACTACACATTTAAGGACATGGATGCT-GTCCCGATGAATGTCATTCGG-    825

BSNT_03297___    821 TGAAATAA    828
                          |||
BL02434___kdu    826 -----TAA    828


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03297 and BL02434

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
