Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04485 and BL02408
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_04485___menD.1.5803.seq
# -bsequence dna-align/BL02408___menD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04485___menD-BL02408___menD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04485___menD-BL02408___menD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04485___menD
# 2: BL02408___menD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1846
# Identity: 1249/1846 (67.7%)
# Similarity: 1249/1846 (67.7%)
# Gaps: 209/1846 (11.3%)
# Score: 3965.0
#
#
#=======================================
BSNT_04485___ 1 TTGACAGTCAACCCGATTACTCATTACATCGGAAGTTTTATTGATGAATT 50
|||||.|..||.||||||||..|.||.||.||.|.||||||||||||..|
BL02408___men 1 TTGACTGAAAATCCGATTACAAAATATATAGGGAATTTTATTGATGAGCT 50
BSNT_04485___ 51 CGCCCTTTCCGGAATTACGGACGCCGTCGTTTGTCCGGGCTCAAGATCTA 100
..|||||.|.||..|.||.||.||.|||.|.||.|||||.||||||||.|
BL02408___men 51 TTCCCTTGCAGGCGTGACAGAAGCGGTCATCTGCCCGGGATCAAGATCGA 100
BSNT_04485___ 101 CACCGCTGGCTGTTCTTTGTGCTGCG---CATCCCGATATCAGCGTCCAT 147
|.||.||.||..| |||| ||.||| |||||.||.||||..||.|||
BL02408___men 101 CGCCCCTTGCGAT--TTTG-GCCGCGAGTCATCCGGACATCAATGTTCAT 147
BSNT_04485___ 148 GTCCAAATTGATGAAAGATCTGCCGGGTTTTTTGCCTTAGGTTTGGCAAA 197
.||||..|.|||||||||||.||.|..||||||||..|.||..|||||||
BL02408___men 148 ATCCATGTGGATGAAAGATCCGCTGCTTTTTTTGCAATGGGCATGGCAAA 197
BSNT_04485___ 198 AGCGAAGC---AGC--GTCCCGTACTATTGATCTGTACATCTGGAACAGC 242
.||.|.|| ||| |||.| |||||||||||||||.||.||.||
BL02408___men 198 GGCAATGCGGAAGCCAGTCGC-----ATTGATCTGTACATCCGGGACGGC 242
BSNT_04485___ 243 CGCGGCTAACTTTTATCCGGCTGTGGTTGAAGCCCATTATTCAAGGGTGC 292
.||.||.||.||.||.|||||||||.|.||.||.||||||||.||..|.|
BL02408___men 243 TGCAGCGAATTTCTACCCGGCTGTGATCGAGGCTCATTATTCTAGAATAC 292
BSNT_04485___ 293 CTATTATTGTGTTAACTGCTGATCGGCCTCATGAGCTGCGCGAAGTAGGC 342
|..||||..|.|||||.|||||||||||.|||||.|||.|.||||||||.
BL02408___men 293 CGCTTATGATCTTAACGGCTGATCGGCCGCATGAACTGAGAGAAGTAGGA 342
BSNT_04485___ 343 GCACCGCAGGCTATTAATCAGCACTTCTTATTCGGTAACTTTGTTAAGTT 392
|||||.|||||.|||.|||||||.|||||||||||.||||||||||||||
BL02408___men 343 GCACCTCAGGCGATTGATCAGCAATTCTTATTCGGAAACTTTGTTAAGTT 392
BSNT_04485___ 393 TTTCACAGACTCTGCTCTTCCTGAAGAGTC-TCCGCAAATGCTGAGATAC 441
||||||||||||.|||.|.|||| |.|||| |||..|.||||||...|||
BL02408___men 393 TTTCACAGACTCGGCTTTGCCTG-ACAGTCATCCTGACATGCTGGCGTAC 441
BSNT_04485___ 442 ATCCGAACGCTGGCAAGC-CGCGCTGCCGGAGAAG-CACAAAAGCGCCCA 489
|||||..|..|||| ||| ||.||.|||||||||| ||.|||||||||
BL02408___men 442 ATCCGGTCTTTGGC-AGCACGTGCAGCCGGAGAAGCCAAAAAAGCGCC-- 488
BSNT_04485___ 490 ATG---GGGCCTGTCCATGTGAATGTGCCGCTGCGCGAACCGCTGATGCC 536
| |||||.||.|||.|.||..|.||||||.|.||.|||||.|||||
BL02408___men 489 --GCGCGGGCCCGTGCATATCAACTTTCCGCTGAGAGAGCCGCTCATGCC 536
BSNT_04485___ 537 GGATCTTTCAGATGAGCCGTTTGGAAGAATGAGAACAGGCCGTCATGTAT 586
|.|.|||...|||||.||.|||..|||..||||||..|||.|||||||..
BL02408___men 537 GAACCTTGAGGATGAACCTTTTCAAAGGCTGAGAAGCGGCAGTCATGTGA 586
BSNT_04485___ 587 CTG-TGAAAACGGGTACGCAGTCTGTTGACCGCGAGTCCCTGTCTGATGT 635
|.| |||||.||| |||| .|||.|| |||||..
BL02408___men 587 CGGTTGAAAGCGG----------------CCGC--TTCCGTG-CTGATCG 617
BSNT_04485___ 636 G--------------GCTGAGATGCTC-----GCAGAGGCTGAAAAAGGA 666
| |||||| ||||| ..||||.|.||||||||.
BL02408___men 618 GCATGAGCTTGTAGCGCTGAG-TGCTCTGATTAAAGAGACCGAAAAAGGC 666
BSNT_04485___ 667 ATGATCGTCTGCGGAGAGCTCCATAG-TGATG-TGGATAAGGAAAACATT 714
.|.|||||||||||||||||.|| || ||||| ||.| ||.|||.|.|||
BL02408___men 667 GTAATCGTCTGCGGAGAGCTGCA-AGATGATGATGCA-AAAGAACATATT 714
BSNT_04485___ 715 ATTACGCTGTCAAAAGC-GCTTCAG--TATCCAATTTTAGCGGATCCGCT 761
.|..|.||.|||.|.|| | ||| ||.||||||||.||.||.|||||
BL02408___men 715 GTAGCTCTTTCACAGGCAG---CAGAATACCCAATTTTGGCTGACCCGCT 761
BSNT_04485___ 762 GTCTAATCTGCGGAATGGTGTTCATGAT-AAAAG-CACTGTTATTGATGC 809
.||.||..||.|.||.||....||| | ||||| .||..||||.|||||
BL02408___men 762 CTCAAACTTGAGAAACGGCACCCAT--TCAAAAGAAACCATTATCGATGC 809
BSNT_04485___ 810 GTATGATTCGTTTTTAAAAGATGATAAGCTGAAGCGGAAACTTCGT-CCT 858
.||.||.||.||.||.|||||.||..|||||||.||..|.| ||.| |||
BL02408___men 810 ATACGACTCATTATTGAAAGAAGAACAGCTGAAACGCGAGC-TCATGCCT 858
BSNT_04485___ 859 GATGTTGTCATTCGGTTTGGACCGATGCCTGTTTCAAAACCGGTTTT--- 905
||..|||||||.||.||.||..|||||||.|||||.||.|||.||||
BL02408___men 859 GAGCTTGTCATCCGCTTCGGTGCGATGCCGGTTTCCAAGCCGCTTTTTCA 908
BSNT_04485___ 906 -CTTATGGCTTAAGGATGATCCG-GCGATTCAGCAAATCGTGATTGA-CG 952
|| |||.|||.|..||||| || |||..|||||||||..|||| |.
BL02408___men 909 GCT----GCTGAAGCAAAATCCGAGC-ATTAGGCAAATCGTCGTTGATCC 953
BSNT_04485___ 953 AGGATGGAGGCTGGAGAGATCCGACGCAGGTAAGCGCGCATATGATTCAT 1002
| ||||||||.|||.|.||||||||.|||.|.|||||.||||||.|.|||
BL02408___men 954 A-GATGGAGGATGGCGCGATCCGACTCAGCTCAGCGCACATATGCTGCAT 1002
BSNT_04485___ 1003 TGTA------ATGCG---TCTGTTTTTGCTGAGGAGATCATGGCAGGCCT 1043
||.| |.|.| .|||||.||||.||
BL02408___men 1003 TGCACGGAAGAGGAGATTGCTGTTCTTGCGGA------------------ 1034
BSNT_04485___ 1044 TACTGCTGCCAGATCCTCAG---------------AGTGGCTGGAAAAGT 1078
|.|.||||.|| || |||| |.|||||.||.||||
BL02408___men 1035 TTCCGCTGTCA-AT--TCAGAAAATAGGACAGGCAACTGGCTTGAGAAGT 1081
BSNT_04485___ 1079 GGCAGTTTGTCAATGGGCGGTTCCGCGAGCATCTGCAAACAATC----AG 1124
|||.|||||.|||..|.||.|||||||..|.|.| ||..|||| ||
BL02408___men 1082 GGCGGTTTGCCAACAGCCGCTTCCGCGCTCTTTT--AAGAAATCTTGAAG 1129
BSNT_04485___ 1125 CAGTGAAGATGTTTCGTTTGAAGGCAATCTCTATCGAATCCTTCAGCATC 1174
| |||.|||.||.|.||||||||.|||.||||.||.|.||||||||||
BL02408___men 1130 C--TGAGGATCTTACCTTTGAAGGAAATATCTACCGGAACCTTCAGCAT- 1176
BSNT_04485___ 1175 TTG-TGCCTGAAAACAGCTCGCTGTTTGTGGGAAACAGCATGCCGATCAG 1223
||| |.||.||.||||||||..|||||||.||||||||||||||||||.|
BL02408___men 1177 TTGATTCCGGACAACAGCTCCGTGTTTGTCGGAAACAGCATGCCGATCCG 1226
BSNT_04485___ 1224 GGATGTTGATACGTTTTTTGAAAAGCAGGACCGCCCTTTCCGGATTTATT 1273
.||||..||.||.|||||||||||.|||||.||..|.||||||||||.|.
BL02408___men 1227 CGATGCGGACACATTTTTTGAAAATCAGGAACGGACCTTCCGGATTTTTG 1276
BSNT_04485___ 1274 CAAACCGGGGAGCAAACGGGATAGACGGTGTCGTCTCCTCTGCCATGGGG 1323
|.||..|.||.||.|||||||||||||||||.|||||..|.||..||||.
BL02408___men 1277 CCAATAGAGGGGCGAACGGGATAGACGGTGTTGTCTCAACGGCGCTGGGC 1326
BSNT_04485___ 1324 GTATGTGAAGGAACAAAAGCGCCTGTTACCCTTGTGATTGGAGATTTATC 1373
.|||.||..|.|||.||||..||.||.||||||||.||.||.|||.|.||
BL02408___men 1327 ATATATGCCGCAACGAAAGAACCGGTAACCCTTGTCATCGGCGATCTGTC 1376
BSNT_04485___ 1374 TTTTTATCACGATTTAAACGGCCTGCTGGCGGC--CAAAAAGCTGGGTAT 1421
.|||||||||||.|||||||||||.|| ||.| |||||.|||.|.|||
BL02408___men 1377 ATTTTATCACGACTTAAACGGCCTCCT--CGTCAGCAAAACGCTCGATAT 1424
BSNT_04485___ 1422 TCCTCTTACTGTGATTCTTGTCAATAATGACGGAGGAGGGATTTTCTCCT 1471
|||.||.|||||..||||.|||||.|||||.||.||.||.||||||||.|
BL02408___men 1425 TCCGCTGACTGTCGTTCTCGTCAACAATGATGGCGGCGGCATTTTCTCAT 1474
BSNT_04485___ 1472 TTTTGCCGCAGGCTTCTGAAAAGACACACTTTGAAGAT-TTGTTCGGCAC 1520
||.|.||.||..||.|||||.|.|...||||.| ||.| ||||||||.||
BL02408___men 1475 TTCTTCCCCAATCTGCTGAAGAAAGGTACTTCG-AGCTCTTGTTCGGAAC 1523
BSNT_04485___ 1521 ACCGACAGGGCTCGATTTCAAGCATGCCGCTGCA--CTTTACGGCGGAAC 1568
.|||||.||.|||||.|||.|||||||.|| || ||.||.|| ||.||
BL02408___men 1524 GCCGACGGGTCTCGAATTCGAGCATGCTGC--CAAGCTGTATGG-GGGAC 1570
BSNT_04485___ 1569 G-TATTCATGCCCGGCTTCTTGGGATGAAT--TCAAAACA----GCTTAC 1611
| |||..|||||| ||||| ||...||| ||..|.
BL02408___men 1571 GCTATATATGCCC------------TGAATCATCCGCACATTTTGCCGAT 1608
BSNT_04485___ 1612 GCG-------CCGCAGGCAGACAAGCC-CGGACTCCATTTGATTGAAATC 1653
||| ||.|.|.||..| ||| |||..|..||.|.|||||..|.
BL02408___men 1609 GCGTATTTATCCTCCGTCAACC--GCCGCGGCTTGGATATCATTGAGGTG 1656
BSNT_04485___ 1654 AAAACGGATCGCCA--ATCAAGAGTCCAGCTTCATCGCGATATGCTGAAT 1701
||||||.|.|||.| ||| |.||..|||..||||||...|||||..||
BL02408___men 1657 AAAACGAAGCGCGATGATC--GTGTGGAGCAGCATCGCCGGATGCTTGAT 1704
BSNT_04485___ 1702 GAGGCTGTGCGGGAAGTGAAAAAACAATGG-------GAACTGTAA 1740
...||..|||..|||.|.|.||||.|.||| ||
BL02408___men 1705 TCCGCGCTGCATGAAATAAGAAAAGAGTGGCCGTTTTGA------- 1743
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