Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04480 and BL02405
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04480___menE.1.5803.seq
# -bsequence dna-align/BL02405___menE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04480___menE-BL02405___menE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04480___menE-BL02405___menE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04480___menE
# 2: BL02405___menE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1570
# Identity: 1002/1570 (63.8%)
# Similarity: 1002/1570 (63.8%)
# Gaps: 242/1570 (15.4%)
# Score: 3009.5
#
#
#=======================================
BSNT_04480___ 1 ATGCTGACAGAACAGCCCAACTGGCTCATGCAGCGGGCACAGCTGACACC 50
|||||||..||.||.||.||.|||||.|..|||||.|||.|.||||||||
BL02405___men 1 ATGCTGATGGACCATCCGAATTGGCTTAAACAGCGAGCAGAACTGACACC 50
BSNT_04480___ 51 TGAGAGAATCGCTCTCATCTATAGAGACCA-AACCGTGACATTTGCAGAA 99
|||.||.||.|||.|.||..|..||||.|| ||.| ||||.|||....||
BL02405___men 51 TGACAGGATGGCTGTGATTCAGGGAGATCACAAGC-TGACTTTTATTCAA 99
BSNT_04480___ 100 TTATTTGCCGCGTCTAAGCGAA------TGGCGGCACAGCTTGCCGCTCA 143
||||||...| ||||.|| .|.|||| |.|||.|
BL02405___men 100 TTATTTCATG-----AAGCAAAAAAAACGGCCGGC--------CGGCTGA 136
BSNT_04480___ 144 -----TTCGGTTCGA--AAAGGGGATACTGCGGCTATTTTGCTCCAAAAC 186
||.|||..|| ||.||||||||.||||||.|..|.|||..||||
BL02405___men 137 AGAGCTTTGGTCTGAAGAATGGGGATACAGCGGCTTTACTTCTCACAAAC 186
BSNT_04480___ 187 CG--TGCAGAAATGGT-ATACGCCGTTCACGCTTGTTTTTTGCTTGGTGT 233
|| || ||.||||| || ||||||.||.||.||.|||.|.||.||.||
BL02405___men 187 CGGATG--GAGATGGTCAT-CGCCGTCCATGCCTGCTTTCTTCTCGGCGT 233
BSNT_04480___ 234 TAAGGCG----GTGCTTT--TGAATACGAAGCTGTCAA------------ 265
| || || ||| ||||||||||||||||||
BL02405___men 234 T----CGCATCGT--TTTGCTGAATACGAAGCTGTCAATGGCCGAACGAT 277
BSNT_04480___ 266 CACATGAAAGGCTGTTTCAGCTGGAGGATTCCGAATCCGGC----TTTTT 311
||.||.||| |.||..||||.||| || .|.||
BL02405___men 278 CATATCAAA------------TTGAACATTCTGAA----GCAAAGCTATT 311
BSNT_04480___ 312 ACTGACAGATTCAAA--CTTTGACA-AGAAAGAGTAT------GAAC--- 349
.||.||||| .|| |||| || || |||||.|| |.||
BL02405___men 312 GCTTACAGA---GAAGCCTTT--CATAG-AAGAGCATAGAGGGGGACAGC 355
BSNT_04480___ 350 ---------------ACAT------CGTTCAAA----CGATTGATGTGGA 374
|||| |||||||| ||.|||
BL02405___men 356 CGGCTCGCGCTGTTGACATTGAAGACGTTCAAAACGCCGCTTG------- 398
BSNT_04480___ 375 TGAACTGATGAAAGAAGCAGC-----ACAGGAAATTGAGATCCAAGCTTA 419
.|.|| ||| |||||.|| ||||
BL02405___men 399 ----------------CCCGCCGGTTACA-GAAATCGA-----AAGC--- 423
BSNT_04480___ 420 TATGCAAATGGATGCAACGGCAACGCTGATGTATACGTCGGGTACGACAG 469
||.||..||||.|...|||||||..|.|||||||||||.||.|||||.|
BL02405___men 424 -ATTCATTTGGACGATGCGGCAACAATCATGTATACGTCTGGAACGACCG 472
BSNT_04480___ 470 GAAAGCCCAAGGGAGTTCAGCAAACGTTCGGAAACCACTATTTCAGTGCG 519
||..|||.||.||.|||..|||.||.||.|.||||||.||||||||.|||
BL02405___men 473 GACGGCCGAAAGGGGTTATGCAGACATTTGCAAACCATTATTTCAGCGCG 522
BSNT_04480___ 520 GTGTCGTCCGCGCTT-AATTTGGGTATAACAGAACAAGACCGCTGGCTTA 568
||.||.||||| ||| ||||||||..|...||||||.|||||||||||.|
BL02405___men 523 GTTTCATCCGC-CTTGAATTTGGGGCTCCAAGAACACGACCGCTGGCTGA 571
BSNT_04480___ 569 TCGCATTGCCGCTCTTTCATATCAGCGGCTTGTCCGCATTATTTAAATCT 618
||||.||||||||.||.||||||||||||||.||.||..|.||||||||.
BL02405___men 572 TCGCCTTGCCGCTTTTCCATATCAGCGGCTTATCGGCGCTTTTTAAATCG 621
BSNT_04480___ 619 GTGATCTATGGAATGACTGTCG---TGCTTCACCAGCGTTTTTC-CGTAA 664
||.||.||.||||||||||||| |||.||| |..||||..| ||.||
BL02405___men 622 GTCATTTACGGAATGACTGTCGTTTTGCATCA--AAGGTTTGACGCGGAA 669
BSNT_04480___ 665 GCGATGTGCTGGATTCTATCAACAG-GCATGAAGTGACAATGATATCTGC 713
||.||.||...|||.||||| || .||..||||.||.||...|||.|.
BL02405___men 670 --GAAGTTCTTCGTTCGATCAA-AGACCAGCAAGTAACGATTGCATCGGT 716
BSNT_04480___ 714 GGTGCAGACTATGCTGGCCAGTCTTTTGGAAGAA----ACAAGCCGCTGC 759
.||.|||||.||||||.|.||.|||..||.|.|| ||| |.|||
BL02405___men 717 CGTTCAGACGATGCTGTCGAGGCTTGCGGCAAAAGTCGACA----GATGC 762
BSNT_04480___ 760 CCTGAATCCATCAGATGCATTCTTCTCGGCGGCGGCCCTGCACCGCTGCC 809
||.|.|||..|.||.|||.|..|..|.|||||.||.||.||||||||..|
BL02405___men 763 CCCGGATCATTAAGGTGCCTGTTATTGGGCGGAGGGCCAGCACCGCTTTC 812
BSNT_04480___ 810 ATTGCTTGAGGAATGCCGTGAGAAA--GGATTCCCTGTCTTTCAGTCATA 857
..|.||||||||||| |...||||| ||.|.||| |||.|.|||||.||
BL02405___men 813 TCTCCTTGAGGAATG-CAAAAGAAAGCGGCTGCCC-GTCGTACAGTCGTA 860
BSNT_04480___ 858 TGGAATGACAGAAACATGCTCGCAAATTGTTACCCTGTCGCCGGAATTCA 907
.||||||||.|||||.|||||.||.||||..|||||..|.|||||||.|.
BL02405___men 861 CGGAATGACTGAAACGTGCTCACAGATTGCGACCCTCGCCCCGGAATACT 910
BSNT_04480___ 908 GTATGGAAAAGCTCGGATCTGCGGGGAAACCGCTGTTTTCGTGTGAA--A 955
..||.|||||||||||.||.||.||.|||||||||||| |..|.|| |
BL02405___men 911 CGATTGAAAAGCTCGGTTCAGCCGGCAAACCGCTGTTT--GCATCAAGCA 958
BSNT_04480___ 956 TCAAAAT-----AGAGCGGGACGGACAGGTTTGTGAACCGTTTGAACACG 1000
||||||| |||.|||.||||| .||..||||....|||||.|
BL02405___men 959 TCAAAATCGAAAAGAACGGAACGGA-----ATGCCAACCCGGAGAACATG 1003
BSNT_04480___ 1001 GTGAAATCATGGTCAAAGGCCCGAATGTCATGAAAAGCTATTTTAACCGG 1050
|||||||.|..||.|||||.||||..||.|||||..||||.||.||....
BL02405___men 1004 GTGAAATAACCGTAAAAGGGCCGACCGTTATGAAGGGCTACTTGAAAAAT 1053
BSNT_04480___ 1051 GAGAGC-GCAAACGAAGCCTCTTTTCAA-AATGGCTGGCTGAAAACAGGT 1098
||| || |||||..|||.||| .||||| .|.||||||.|.|||||.|||
BL02405___men 1054 GAG-GCGGCAAATAAAGACTC-ATTCAATGACGGCTGGTTTAAAACCGGT 1101
BSNT_04480___ 1099 GATCTTGGTTATTTGGACAATGAAGGCTTTTTATATGTATTAGACAGACG 1148
|||.|.||.|||||.|||.||||.||.|||||||||||..|.|||||.||
BL02405___men 1102 GATATCGGGTATTTTGACGATGACGGATTTTTATATGTGCTGGACAGGCG 1151
BSNT_04480___ 1149 CTCAGATCTGATCATATCCGGCGGAGAAAACATTTATCCGGCCGAAGTGG 1198
.|||||..|.||||||||.||.|||||||||||.||||||||.|||||.|
BL02405___men 1152 TTCAGACTTAATCATATCAGGAGGAGAAAACATCTATCCGGCTGAAGTCG 1201
BSNT_04480___ 1199 AGTCAGTGCTGCTTTCACATCCCGCTGTGGCCGAAGCCGGGGTTTCAGGG 1248
||.|.||.||.||.|||||.|||..|||.||.|||||.|||||...|||.
BL02405___men 1202 AGGCCGTTCTTCTGTCACACCCCAATGTCGCGGAAGCGGGGGTGAAAGGA 1251
BSNT_04480___ 1249 GCTGAGGACAAAAAATGGGGGAAAGTGCCTCACGCCTATCTTGTCCTTCA 1298
|..||.|||||||..|||||.||.||.||.|||||||||||.|||....|
BL02405___men 1252 GTCGATGACAAAACTTGGGGAAAGGTTCCCCACGCCTATCTCGTCGCCGA 1301
BSNT_04480___ 1299 CAAACCTG-TGA-GCGCAGGAGAATTGACTGACTACTGTAAAGAAC-GCT 1345
||..||.| ||| |...||||| .|||..||.|..||.||||||| |||
BL02405___men 1302 CAGCCCCGTTGATGAAGAGGAG--CTGAGCGAATTTTGCAAAGAACGGCT 1349
BSNT_04480___ 1346 TGGCGAAGTATAAAATTCCGGCGAAA----TTCTTTGTGCTTGACCGCCT 1391
| ||....||||||.| |.|.||| |||.||.|| |.||..|.||
BL02405___men 1350 T-GCTTCATATAAAGT---GCCTAAAGCATTTCATTTTG-TCGATAGGCT 1394
BSNT_04480___ 1392 GCCGCGCAATGCGTCTAATAAGCTCTTGCGAAATCAGCTGAAGGATGCGC 1441
||||.|.|||||.||.|||||.||..||.||.||.|..||.||
BL02405___men 1395 GCCGAGAAATGCTTCAAATAAACTGATGAGACATAAATTGTAG------- 1437
BSNT_04480___ 1442 GTAAAGGAGAACTGCTATGA 1461
BL02405___men 1437 -------------------- 1437
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