Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04470 and BL02401
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04470___ythB.1.5803.seq
# -bsequence dna-align/BL02401___ythB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04470___ythB-BL02401___ythB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04470___ythB-BL02401___ythB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04470___ythB
# 2: BL02401___ythB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity: 744/1106 (67.3%)
# Similarity: 744/1106 (67.3%)
# Gaps: 121/1106 (10.9%)
# Score: 2472.5
#
#
#=======================================
BSNT_04470___ 1 ----------ATGGAGATTTCAACTGACGCTCTGATCGCCATCTCAATTA 40
||||| .||||.||.||.|||.|.||.||.||.||..
BL02401___yth 1 ATGCAACTGGATGGA----ACAACAGATGCCCTGCTGGCTATTTCGATCG 46
BSNT_04470___ 41 TCTGGGGCTTTGTGTTTATTTACGCCGTCATGGCGACAATGGATTTTGGA 90
|||||||.|||.|.|||||.||||||||.||||||.|.||||||||||||
BL02401___yth 47 TCTGGGGATTTATATTTATATACGCCGTTATGGCGTCGATGGATTTTGGA 96
BSNT_04470___ 91 GCGGGATTTTGGTCTATGATCTATTTAAACAAGGAGCATATGAAGGCCAC 140
||||||||||||||.|||||.|||.|.|||||..|.||..||||.||.||
BL02401___yth 97 GCGGGATTTTGGTCGATGATTTATATGAACAAAAAACAGCTGAAAGCAAC 146
BSNT_04470___ 141 CGATATTGCGAATCGCTTTTTGTCCCCGACTTGGGAGGTCACAAACGTCT 190
|.|||||||.||.||||.|.|.||.|||||.|||||.||.||.||.||.|
BL02401___yth 147 CAATATTGCAAACCGCTATCTTTCTCCGACCTGGGAAGTAACCAATGTTT 196
BSNT_04470___ 191 TTATTGTGGCCATCGTCGTGGCGCTTTTCAGTTTTTTCCCCGGCGCGACA 240
|.||.||.|..||||||||.||.||||||||.||||||||.||||..||.
BL02401___yth 197 TCATCGTCGGAATCGTCGTAGCCCTTTTCAGCTTTTTCCCGGGCGGCACT 246
BSNT_04470___ 241 TTTGTGCTCGGCACCGTTTTATTAATTCCCGGAAGCATGATTTTACTGCT 290
||||||||.||.||.||..|.||.||||||||.|||||.||||||.||||
BL02401___yth 247 TTTGTGCTGGGGACTGTGCTTTTGATTCCCGGCAGCATCATTTTATTGCT 296
BSNT_04470___ 291 TTTAGCGATTCGAAGCGGATTTCTCGTGTTTTCAAATACAGCAAAGGA-- 338
|||.||||||||||||||||||.|.||.||.||..|..|.|||||.||
BL02401___yth 297 TTTGGCGATTCGAAGCGGATTTTTGGTCTTCTCCCACGCTGCAAAAGATT 346
BSNT_04470___ 339 --GCGGAAAA---CGCTAAGATATATTTCCGGCATCTCCGGCTTTATCAT 383
| ||| ||||.|..||..||||.||.|||..||||||||||||
BL02401___yth 347 ATG----AAAGGGCGCTGACTTACGTTTCAGGGATCAGCGGCTTTATCAT 392
BSNT_04470___ 384 TCCTGCTATTTTAATTTTGGTGCTT-CCTGTGACACACGG---------- 422
|||.|||.|||||||..|.|| ||| ||||||||||||||
BL02401___yth 393 TCCGGCTGTTTTAATCCTTGT-CTTGCCTGTGACACACGGCAATTTCGTA 441
BSNT_04470___ 423 ----AGGGTTTATAGAAAAAACGGATGGAATCTAT--AACTTAAATATGT 466
||| ||| |||||.|..|.|.|| .|||| |||
BL02401___yth 442 TACCAGG-----TAG-----ACGGAAGCCACCAATTGGACTT-----TGT 476
BSNT_04470___ 467 CTAAAATCTTTTCAAGCCCCAACGCCTATTCATTTATCGGGTTTGCGATT 516
| ||..|.||||.||||||..|.||||||||.|||||.||.||.||.|||
BL02401___yth 477 C-AATTTGTTTTTAAGCCCTCATGCCTATTCTTTTATGGGCTTCGCCATT 525
BSNT_04470___ 517 TTAAGCACCTTATTTTTGTCCTCGCTGCTGCTTGCAGATGTTTCAAATGT 566
||.||.||..|.|||.||||.||.||||||||.||.|||.||||||||||
BL02401___yth 526 TTCAGTACGCTGTTTCTGTCTTCACTGCTGCTGGCTGATTTTTCAAATGT 575
BSNT_04470___ 567 GGCAGAGGAACAGGATGCGTACCGAGCCTACAGAAAAAGCGCCCTGATTA 616
.||.|..|||.|.||.|||||.|..|.||||.|...||.|||..|.||||
BL02401___yth 576 AGCCGGAGAAAAAGACGCGTATCAGGTCTACCGCCGAAACGCTTTAATTA 625
BSNT_04470___ 617 CCGGCCCGATTTCAC------TGTTGTTTGCAGTATGCATTATGGTGACA 660
||||.|||.|..||| |||.||| || ||||.|||.||||.
BL02401___yth 626 CCGGGCCGCTCGCACTGCTCATGTCGTT--CA----GCATCATGATGACC 669
BSNT_04470___ 661 ATGCGGAATGAAGCAAACTGGCTGTACAGCGGAATGATGAATGATTTTAC 710
|||.|||..|||||.|.||||||.||.|....|||||||.|.|...||.|
BL02401___yth 670 ATGAGGACGGAAGCCAGCTGGCTTTATACAAAAATGATGGACGGGCTTCC 719
BSNT_04470___ 711 TTGGATTATTGCATCGT------------TCATCACATTTGTCATTGCTG 748
.|||.|.|||..||||| ||.||.||||||
BL02401___yth 720 ATGGCTGATTTTATCGTTTTTGCTGTTTCTCGTCGCATTTG--------- 760
BSNT_04470___ 749 GAATC-GCTCTTTTTCTGCCTAACAAAAGCTTTGGGCAAAACA------- 790
| |||||.||||||||.|||| |.||.||||
BL02401___yth 761 ----CGGCTCTGTTTCTGCCAAACA---------GACATAACAGCGACCG 797
BSNT_04470___ 791 --TCGGAAAACCGCGTCTCGCACTTGTTGCGATTGGGATACAGTATTTTC 838
|.|||||.|||||.||.||..|..|.||.|||..|.|.|||||||||.
BL02401___yth 798 GCTGGGAAAGCCGCGCCTGGCTGTCATCGCCATTACGCTGCAGTATTTTA 847
BSNT_04470___ 839 TCGCAAGCTACGCGTACGGGCGGGCGCATCTTCCGTATATGATTTATCCC 888
..||.|||||.|.|||||||.|||||||.|||||.||.|||.|.|||||.
BL02401___yth 848 CGGCGAGCTATGTGTACGGGAGGGCGCACCTTCCTTACATGGTCTATCCT 897
BSNT_04470___ 889 GATGTGAC-AGTCATGTCAGGCTTCACAGAGCCAGCAACGTTCAGAGCGC 937
|||||.|| |.||| .||.||||||||.|..||.|..||.|||||.||||
BL02401___yth 898 GATGTCACGATTCA-ATCGGGCTTCACCGCACCGGAGACATTCAGGGCGC 946
BSNT_04470___ 938 TGTTTGCA--ACGTATATCGTTGCATTTATCATTCTATTTCCGGGCTTCT 985
|||| || .|.||.|||||.|..|||||.|||.||||.||.|||||.|
BL02401___yth 947 TGTT--CATCTCCTACATCGTCGGTTTTATTATTTTATTCCCCGGCTTTT 994
BSNT_04470___ 986 TTTTCTTCTGGAAAATGTTTATGCGAGATAAACGCTATATCCGCCAGGAG 1035
.||..|||||||||.||||.|||...||.||.||.||.|||...|||.|.
BL02401___yth 995 ATTATTTCTGGAAATTGTTCATGAAGGACAAGCGGTACATCAAACAGCAT 1044
BSNT_04470___ 1036 GAATAG 1041
|||||.
BL02401___yth 1045 GAATAA 1050
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