Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04469 and BL02400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_04469___ythA.1.5803.seq
# -bsequence dna-align/BL02400___ythA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04469___ythA-BL02400___ythA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04469___ythA-BL02400___ythA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04469___ythA
# 2: BL02400___ythA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity: 977/1370 (71.3%)
# Similarity: 977/1370 (71.3%)
# Gaps: 82/1370 ( 6.0%)
# Score: 3356.5
#
#
#=======================================
BSNT_04469___ 1 GTGGATGATTTAGTTTTGGCCAGAAGCCTTTTTGGCACGACGATGGGCTT 50
.||.||||.||..||||.||.|||||||||||.||.||.||||||||.||
BL02400___yth 1 ATGAATGACTTGATTTTTGCAAGAAGCCTTTTCGGAACAACGATGGGATT 50
BSNT_04469___ 51 TCATATCATTTTCGCAACGCTTGGAGTCGGTCTCCCGCTCATGATTTTAG 100
.|||||.|||||.||..||||.||.|||||..|.||..|.||||||||..
BL02400___yth 51 CCATATTATTTTTGCCTCGCTCGGTGTCGGAATTCCTTTGATGATTTTGC 100
BSNT_04469___ 101 TGGCGGAATTGATCTATCAAAAAACGAAAGATGACCATTATGCGATCATG 150
||||.||..||||||||||||.||||||||||..|||.||.||.||.|||
BL02400___yth 101 TGGCCGAGCTGATCTATCAAAGAACGAAAGATCCCCACTACGCCATTATG 150
BSNT_04469___ 151 GCGAAAAGATGGACGAAAGCACAAGCCGTTTTGCTGGGGGTCGCCATTCC 200
||.||||||||||||||.||.||.|||||.|||||.|||||||||||.||
BL02400___yth 151 GCCAAAAGATGGACGAAGGCGCAGGCCGTGTTGCTCGGGGTCGCCATACC 200
BSNT_04469___ 201 GACCGGAACGATCGCGGGCACTCAGCTCGCGCTTTTATGGCCGGGATTTA 250
|||||||||.||.||.|||||.|||||.||.||..|.|||||||||||.|
BL02400___yth 201 GACCGGAACCATTGCCGGCACGCAGCTAGCCCTGCTCTGGCCGGGATTCA 250
BSNT_04469___ 251 TGGAAGTCATCGGCCGGGTGATGTCCCTGCCATTTCAAATTGAAATCTAT 300
|||||||.|||||....||.||||||||.||||||||||||||||||||.
BL02400___yth 251 TGGAAGTGATCGGAAAAGTCATGTCCCTTCCATTTCAAATTGAAATCTAC 300
BSNT_04469___ 301 GCTTTTTTTGTTGAAGCCCTTTTCATGTCGATTTATGTATACGCAGCAGA 350
||.||||||.||||.||..|.||.|||||.||||||||.||||||||.||
BL02400___yth 301 GCCTTTTTTATTGAGGCTTTATTTATGTCCATTTATGTTTACGCAGCCGA 350
BSNT_04469___ 351 -CCGCTTATCACCTGCA---ATGAGGATTGTTGCTGTTTTCTTTGT-GTT 395
|.|||.| ||.|| |||||.|||...||.||..|.|||.| |||
BL02400___yth 351 TCGGCTGA----CTCCACTTATGAGAATTACAGCCGTCATTTTTATCGTT 396
BSNT_04469___ 396 AGTCGGGGCCGCAGCATCCGCTGTTCTGATCACGAATGTTCACGCTTTTG 445
| ||||.||.||.|||||.||..|..||||.||.|||||.|||||||||.
BL02400___yth 397 A-TCGGAGCAGCCGCATCGGCCATCTTGATTACAAATGTGCACGCTTTTC 445
BSNT_04469___ 446 AAGGTACGCCCGCCGGTTTTAAAATTTTAAACGGAAAAATCACAGATGTT 495
|.||.|||||.|..||.||.||||||.|||||||..||||.||.||||||
BL02400___yth 446 AGGGAACGCCAGAAGGCTTCAAAATTGTAAACGGTGAAATTACGGATGTT 495
BSNT_04469___ 496 GACCCGTGGGCCGCGTTTTTTAATCCTAGCTTTTTTATCACTGCCGGCCA 545
.|.||||||.|.|||||.||.||....||||||.|...|||.||.||.||
BL02400___yth 496 CAGCCGTGGACGGCGTTCTTCAACAAAAGCTTTGTGGCCACAGCAGGACA 545
BSNT_04469___ 546 TGTCGTGCTGTCCGCGTTTATGACCGGTGCGTTTATCGTGGCTTCTGTTG 595
|||.||..|.|||||.||||||||.|||||||||||..|.||..|..|.|
BL02400___yth 546 TGTTGTCGTCTCCGCTTTTATGACAGGTGCGTTTATTATTGCGACGATAG 595
BSNT_04469___ 596 CGGCGTATAAAATGATCCG-------GACGAGGAAAAAGGAAAAGGTCTA 638
|.||.||.||||||.|||| |.|||.||.|.| |||||
BL02400___yth 596 CCGCCTACAAAATGCTCCGAAACCGCGGCGATGATAGA-------GTCTA 638
BSNT_04469___ 639 TCG-CTTTCACCGGAAAGCCCTTTTGCTCGCACTGACGATCGGCGGTATT 687
|| |.||||..|||||||.||..||||||..||||...||||.||....
BL02400___yth 639 -CGCCCTTCATAGGAAAGCGCTGCTGCTCGGGCTGATTGTCGGAGGAGCG 687
BSNT_04469___ 688 TTTTCATTGCTGACCGCTTTGAACGGACATGAATCTGCACAGATGCTGTA 737
|||||..||.|.||.|||.|||.|||.||.|||||.||||||.|.||..|
BL02400___yth 688 TTTTCTCTGGTCACGGCTCTGAGCGGGCACGAATCCGCACAGCTACTTCA 737
BSNT_04469___ 738 CGAATACCAGCCCGAAAAATTAGCCGGTGCGGAAGGCCTGTTTGAAA-CA 786
|...||||||||.||||||.|.||.||.||.|||||.|||||||||| |.
BL02400___yth 738 CCGCTACCAGCCTGAAAAACTGGCGGGCGCAGAAGGGCTGTTTGAAACCC 787
BSNT_04469___ 787 AGATCCCATGCCCCGCTCGCTATCGGCGGTTTTACCGACCCGAATGAAGA 836
|| ||||||||.||.||.||.||||||||.||||| |||.||
BL02400___yth 788 AG-TCCCATGCTCCTCTTGCGATCGGCGGATTTAC---------TGATGA 827
BSNT_04469___ 837 AAA---------AGTAAAATGGGCAATCGAGATTCCATGGGCTTTAAGCT 877
||| .||.||||||||.||.||||||||.|||||||||||||
BL02400___yth 828 AAAGACGCAATCGGTGAAATGGGCGATTGAGATTCCGTGGGCTTTAAGCT 877
BSNT_04469___ 878 TTTTGGCAGCGAACCGTTTTGACACTGTTGTAAAAGGATTAAATGCATTT 927
|||||||.|..|||||.||||||||.||.||||||||..|.||||..|||
BL02400___yth 878 TTTTGGCCGACAACCGCTTTGACACCGTCGTAAAAGGGCTGAATGACTTT 927
BSNT_04469___ 928 CCGAGAGATGAATGGCCGCCGCTTTTCATTCACACGCTGTTTAATGCGAT 977
||.||.|||||.|||||.||.||.||||||||.||..|.|||||.|..||
BL02400___yth 928 CCAAGGGATGAGTGGCCTCCCCTGTTCATTCATACCTTATTTAACGGCAT 977
BSNT_04469___ 978 GGTCGGTGTAGGCATGCTGCTTATTCTTTATTCCATTATCGGTGTCGTCT 1027
|||...|.|.||||..||..|.|||.|||||.||..|.|.|||.|..|.|
BL02400___yth 978 GGTTTTTATCGGCAGCCTTTTGATTGTTTATGCCGCTGTGGGTTTTATTT 1027
BSNT_04469___ 1028 GGAGAAAGGTGCTCAAGAAAGACCG-TTTCCCAACG-TGGCTTTTGGTCA 1075
|||||||.||..|.||.|||||||| |||||| || |||.|..|||.|.
BL02400___yth 1028 GGAGAAAAGTCATGAAAAAAGACCGCTTTCCC--CGCTGGATGCTGGCCG 1075
BSNT_04469___ 1076 TTTTCATGACAGCAGGCCCTTTTAG-TCTCA----TCGGCATTGAATTCG 1120
|.|||||.||.|..||||| | ||.|| |||..||.|||.|.|
BL02400___yth 1076 TGTTCATAACCGGCGGCCC-----GCTCGCATTGCTCGCAATCGAACTTG 1120
BSNT_04469___ 1121 GCTGGATTTTCGCATGTACGGGGAGACAGCCTTGGGTCATCTATCATCTG 1170
|||||.|.|||||.||.||.||.||.||||||||||||||.||.|||.||
BL02400___yth 1121 GCTGGGTATTCGCTTGCACCGGAAGGCAGCCTTGGGTCATTTACCATATG 1170
BSNT_04469___ 1171 CTGAAAACGTCAGATGTCGTAACAACGACTGGCTCGATTGGGCTGCTG-T 1219
|.|||||||||.||.||.||.||.||..|.||||||||.||..|..|| |
BL02400___yth 1171 CAGAAAACGTCGGAAGTAGTGACCACCTCCGGCTCGATCGGCATATTGTT 1220
BSNT_04469___ 1220 TCTTATTTTTCACATTT---GTTTATGCCGTGTTAGGCGCAGCTGTCGTC 1266
|||| ||.||| ||| ||.|||..|.|.|||||.|||||.||.||.
BL02400___yth 1221 TCTT-TTGTTC---TTTATCGTCTATATCATTTTAGGAGCAGCGGTGGTG 1266
BSNT_04469___ 1267 TACGTGCTGCTGTATTATTT---CCGCAAGCACCCGGTTGACGAAGATTT 1313
|.|||..|||..|||||.|| .||| ||.||.|||||.||.||.||
BL02400___yth 1267 TTCGTATTGCAATATTACTTTAAACGC---CATCCTGTTGAAGAGGACTT 1313
BSNT_04469___ 1314 AAATA-CAGCGGAGTCGTAA 1332
|||.| ||||.||
BL02400___yth 1314 AAAAAGCAGCTGA------- 1326
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