Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01836 and BL02396
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01836___wprA.1.5803.seq
# -bsequence dna-align/BL02396___wprA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01836___wprA-BL02396___wprA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01836___wprA-BL02396___wprA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01836___wprA
# 2: BL02396___wprA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3486
# Identity: 1684/3486 (48.3%)
# Similarity: 1684/3486 (48.3%)
# Gaps: 1227/3486 (35.2%)
# Score: 4114.5
#
#
#=======================================
BSNT_01836___ 1 ATGAAACGCAGAAAATTAAGCTCGGTTGTGGCGGC---AGTGCTTATTTT 47
.||||.|| ||
BL02396___wpr 1 ---------------------------ATGGCAGCCGAAG---------- 13
BSNT_01836___ 48 TGCACTGATTTTCAGCCTTTTTTCTCCG-GGAACCAAAGCCGCAGCGGCC 96
.||||.| |||| ..|||.||| ||.||..|.||
BL02396___wpr 14 -----------ACAGCGT------TCCGAATAACGAAA-CCACATTGACC 45
BSNT_01836___ 97 GGCGCGATCGATCAGGCGGCTGCTCTG--GAAAACGG--------CAAAG 136
.||||| |.|.||| ||| | ||||
BL02396___wpr 46 AGCGCG--------------TCCCCTGTTGAA----GCTTCGTTTCAAA- 76
BSNT_01836___ 137 AGCAGACAGGCGCCATGAAGGAGCCGGAACAGGTGAAATGGTACAAAGTG 186
||.||||.| |||||.|.|||||.|||||
BL02396___wpr 77 -----------GCGATGACG----------AGGTGCATTGGTATAAAGT- 104
BSNT_01836___ 187 ACCCCGGGAGCAA--CGGAAATTCAGAAACACTCACA-TAT-GGCACTGA 232
||| |...||.||||.||..|.||.| ||| .|||||..
BL02396___wpr 105 ----------CAATCCTTCAAATCAGGAAATCGCAAACTATACGCACTTC 144
BSNT_01836___ 233 C-CGTAAAGAGTG-ATTCAGTAT-------TGAATGTATCTGTATA-TCC 272
| |||.|| |.|| |.|||| || ||||..|.||.||.|| |||
BL02396___wpr 145 CGCGTCAA-ATTGAAATCAG-ATGCAGAGCTGAACATTTCCGTCTACTCC 192
BSNT_01836___ 273 AAGTAAGGAAAAAGCGCTTAAA-----GATGAAACGTTTGAGATGTACCG 317
||...||||||.|| || .||.||||||||| ||||
BL02396___wpr 193 -AGCCTGGAAAATGC-----AACTGGTCATCAAACGTTTG------ACCG 230
BSNT_01836___ 318 TTCTTTCACAGCGG-----ACGATGGAAA------------AAGCGAAGT 350
.| |||.||| .|.|||.||| ||.|||
BL02396___wpr 231 AT-----ACAACGGCTACTCCTATGAAAATAATCCTGCTTTAATCGA--- 272
BSNT_01836___ 351 CATTTTTCC-ATACGCGTGGAGCGGCCCTTACTATGTAAAAGTTGAATAC 399
|||||| || .||.||||..||.||||||||..|||||||.|||
BL02396___wpr 273 ---TTTTCCGAT-TGCCTGGAAAGGTCCTTACTACATAAAAGTAGAA--- 315
BSNT_01836___ 400 CTCGGAGAAGAAGAGCCA----GAGGACGACGGAACGGCAGAAGCAGCTG 445
||...||| |||||..|||.|||..| ..||..|.
BL02396___wpr 316 ----------AATCACCATGATGAGGAAAACGAAACCAC---TTCAATTA 352
BSNT_01836___ 446 CAGAAGCCAAGTAT-------ACGATTGGGTATAAAGG---CACCAAAAA 485
|||| ||| ||.||..|.|||.|||| ||||
BL02396___wpr 353 CAGA-------TATTTCTTACACCATCAGCTATGAAGGCGTCACC----- 390
BSNT_01836___ 486 ACAG---CCGTCAGATTTAGAAGAG---GAAGAAGCTTGTCCGGTTGAAA 529
|.| |||||| .|..||||| |||||||..|||||||..|||.
BL02396___wpr 391 -CTGCCTCCGTCA---ATCCAAGAGGCAGAAGAAGAGTGTCCGGCAGAAT 436
BSNT_01836___ 530 TGAGTGTCGATCAGAA---GAAATCAGGAAAAGGCATCCTGGATAAGTTG 576
|.||.|| .||.||| |||| ||||.||.|||||..|..|..||||.
BL02396___wpr 437 TAAGCGT--TTCCGAAAGGGAAA-CAGGCAAGGGCATATTAAAACAGTTA 483
BSNT_01836___ 577 AGAGCGATTCGTGATGAGCAGCTGAGCC------AAACAGCAGAAGGCAA 620
|||.||||..|.||||| ||.| | ||||.|.|.||||.||
BL02396___wpr 484 AGAACGATCAGGGATGA--AGTT----CTTTCAAAAACTGAAAAAGGAAA 527
BSNT_01836___ 621 AGAACTGACAAGTCTTTATTACAAAGCAGCACCGTTTATCGTTGCAAAAC 670
|||.|||.|....|||||.||.||||||||.||.||.|||...||||||.
BL02396___wpr 528 AGAGCTGTCTTCCCTTTACTATAAAGCAGCTCCATTCATCAGCGCAAAAA 577
BSNT_01836___ 671 TCGCAC-TCAATAAAAC----AGCAAGA-AATGAAATCTATCAGGATCTT 714
| ||.| |.||.|||.| || ||| |.|| ||||..|.||.||.
BL02396___wpr 578 T-GCTCTTTAACAAATCGATGAG--AGACAGTG---TCTACAAAGACCTG 621
BSNT_01836___ 715 GTGACA-TTAAAGCCGTTATTTGACGATGTGTCAGAAAACGGA------- 756
||| || .|.||||||.|.||||..|||||..|..||||||||
BL02396___wpr 622 GTG-CAGCTGAAGCCGCTGTTTGCAGATGTCGCTAAAAACGGACAAGTGA 670
BSNT_01836___ 757 --GCATCATCTTCGTATAAGGTCACTGAA-AAGGATCAAAAAGCAATCAA 803
||||..|| |.|.|| ||| .|.|||||||||||.||||.
BL02396___wpr 671 GCGCATACTC---------GATTAC-GAATGATGATCAAAAAGCGATCAG 710
BSNT_01836___ 804 CCGGCTATATGATAAAGCTTTACAATCAGTCCCGT-CATTCC-------T 845
.||.||.||.||.|.|||| ..|.||| |.|||| |
BL02396___wpr 711 TCGCCTGTACGAAACAGCT---------CGCGCGTCCGTTCCCGAGCCGT 751
BSNT_01836___ 846 T----AAAGAG--GAGATAAA-----GAAACA-AGCGG-ACCGACTAAAT 882
| |||.|| | |||.|| ||||.| |.||| |.|||..||.|
BL02396___wpr 752 TGAAAAAACAGCTG-GATCAAGTCGCGAAAGACATCGGCATCGAACAATT 800
BSNT_01836___ 883 ATGAAGCAGCTGCAA------GGC--------AAAACAGCCGG------- 911
|..|.||| |||| ||| |||| |||.||
BL02396___wpr 801 AACAGGCA---GCAAAGTATCGGCTGTGCTTGAAAA-AGCGGGGATGGCG 846
BSNT_01836___ 912 --AGCCATTTTAACA---------GAAAACAATATTGCAGC-AAAAAGTG 949
||| ||.|.|| |||||| ..||.||.| .||||.||
BL02396___wpr 847 ACAGC---TTCATCAAGCGCGCCCGAAAAC--CGTTACATCGTAAAATTG 891
BSNT_01836___ 950 AAGTTCAGA---CAACAAA---GGTTATTTTCAAGGTAAAGGACAATAAA 993
|| ||| |||.||| ||.|.|||..||..|||||..|||
BL02396___wpr 892 AA----AGAAGGCAAAAAACCGGGATCTTTCAAATCTAAAGCCCAA---- 933
BSNT_01836___ 994 AGCCTCTCATC---CGTACATAATGAAATGAAGGGCTTTTCTGCAAGCGC 1040
||||| |||.|| |||.|| ||.||
BL02396___wpr 934 ------TCATCCGGCGTCCA-------------GGCATT------AGAGC 958
BSNT_01836___ 1041 GC--------AATCGAAA--------AAAGACATATCCAATGTGAAAAAG 1074
.| ||.|.||| |||||.||.|.|..||||.|||.|
BL02396___wpr 959 CCCTCGGTAAAAGCAAAACGGCATTTAAAGATATGTACGTTGTGGAAATG 1008
BSNT_01836___ 1075 GCAAAGAAA-CTGTTTGACAATCTGTATTCATTTGAACTTCCGAAAGACG 1123
||.|||| |.||| ||||||
BL02396___wpr 1009 --AAGGAAAGCCGTT----------------------CTTCCG------- 1027
BSNT_01836___ 1124 AGAAACAGAACGGCGCATATACGGCAAGCGCCAAAAGGGTCAAAAGC--G 1171
||..||.|.||||| || |||| |||.|.| |
BL02396___wpr 1028 -GATTCAAAGCGGCG--------------GC--AAAG---CAATATCAGG 1057
BSNT_01836___ 1172 CTGCTGCGACACT-----AT--CCAAGATGTCCAATGTAGAGTTTGCGGA 1214
|.||.|| || || ||||||||.|..|.||.||.||.|..||
BL02396___wpr 1058 CGGCAGC----CTCCAAGATCGCCAAGATGCCTGAAGTGGAATTCGTCGA 1103
BSNT_01836___ 1215 ACCCGTGCAGGAATACAAAAGC-CTGGCAAACGACATTCAGTACCCTTAT 1263
||..||.|||.|||| ..|||| |||.|||..||||..||.||.||.|||
BL02396___wpr 1104 ACAGGTTCAGCAATA-TGAAGCACTGTCAAGAGACACCCAATATCCATAT 1152
BSNT_01836___ 1264 CAATGGCCGCTTAAAAACAACGGTGAAAACGGCGGTGTCAAAAATGCGGA 1313
||||||.||||.|||||.|||||..|||||.|.|.|| ..|||||.||
BL02396___wpr 1153 CAATGGTCGCTCAAAAATAACGGCAAAAACCGTGCTG---CGAATGCTGA 1199
BSNT_01836___ 1314 TGTGAAATATGAGCCTGCCAACACATT-----GCTGTCCAAACGC---AA 1355
..|..|||.|| ||||..|| ||||...|||.|| ||
BL02396___wpr 1200 CATACAATTTG--------AACAGCTTCAGAAGCTGATGAAAGGCAAAAA 1241
BSNT_01836___ 1356 GCTTAACGATACACTCATTGCAGTAGTAGACACAGGCGTTGA-CAGCACG 1404
|||.||.||||||.|.||.||.||.||.|||||||||||||| || .||.
BL02396___wpr 1242 GCTGAAAGATACAGTAATCGCCGTCGTTGACACAGGCGTTGATCA-TACC 1290
BSNT_01836___ 1405 CTTGCCGATTTAAAAGGAAAAGTAAGAACAGATCTCGGACACAATTTTGT 1454
|||||.|||||||..||.|..||.|.||.|||....||..|.||.|.|||
BL02396___wpr 1291 CTTGCGGATTTAAGCGGCAGCGTCAAAAAAGACGAAGGCTATAACTATGT 1340
BSNT_01836___ 1455 CGGACGGAATAACA------ATGCAATGGATGATCAGGGGCATGGGACGC 1498
|||.|| || ||||.||||||||..|.||.||.||.||.|
BL02396___wpr 1341 CGGCCG------CACGGCGGATGCGATGGATGACAATGGCCACGGCACAC 1384
BSNT_01836___ 1499 ATGTCGCAGGCATTATTGCGGCC---CAAAGCGATAACGGCTATTCAATG 1545
|.||..|||||||.|||||.||| ||| ||.|||...|.|||.|||
BL02396___wpr 1385 ACGTGTCAGGCATCATTGCAGCCGCGCAA---GACAACCATTTTTCGATG 1431
BSNT_01836___ 1546 ACTGGATTGAATGCCAAAGCAAAAATCATCCCTGTAAAAGTGCTTGATTC 1595
.|.|||.|.|||||..|.||.|||||..|.|||||.||||||||.|||||
BL02396___wpr 1432 GCGGGAATCAATGCTTATGCCAAAATTCTGCCTGTCAAAGTGCTGGATTC 1481
BSNT_01836___ 1596 CGCAGGTTCCGGAGATACTGAACAAATTGCTCTCGGCATCAAATATGCTG 1645
..||||....||||||||.|||||.|||||...||||||||..|||||.|
BL02396___wpr 1482 TTCAGGCAGTGGAGATACGGAACAGATTGCAAACGGCATCATCTATGCCG 1531
BSNT_01836___ 1646 CTGACAAAGGAGCAAAGGTGATTAATTTAAGTTTAGGCGGAGGC--TACA 1693
|.|||.|.||.|||||.||.||.|||||||||.|.|||| ||| ||||
BL02396___wpr 1532 CCGACCACGGTGCAAAAGTCATCAATTTAAGTCTTGGCG--GGCCATACA 1579
BSNT_01836___ 1694 GCCGCGTGCTTGAATTTGCTTTGAAGTACGCAGCTGACAAAAATGTCTTG 1743
||||.|||.|.||||.|||..|.||.||.||.|||...||||||||...|
BL02396___wpr 1580 GCCGGGTGATGGAATATGCGCTTAAATATGCGGCTTCTAAAAATGTGACG 1629
BSNT_01836___ 1744 ATTGCCGCAGCCAGCGGGAATGATGGAGAAAATGCCTTATCTTATCCTGC 1793
||.|..||.||||.|||.|||||.||||.|...|...|.||.||.|||||
BL02396___wpr 1630 ATCGTTGCCGCCACCGGAAATGACGGAGTATCGGAGATTTCCTACCCTGC 1679
BSNT_01836___ 1794 ATCTTCTAAATATGTGATGTCAGTCGGCGCAACGAA----CCGCATGGAT 1839
||||||.||||||..|.|.||||||||.||.||.|| | |.|||
BL02396___wpr 1680 ATCTTCGAAATATACGCTTTCAGTCGGGGCGACCAATAATC----TCGAT 1725
BSNT_01836___ 1840 ATGACCGCTGATTTCTCTAACTATGGAAAAGGTCTGGACATCTCTGCTCC 1889
.|...|.|.||.|.|||.||.||||||||||||||.||.||....||.||
BL02396___wpr 1726 CTTGTCTCGGACTACTCCAATTATGGAAAAGGTCTCGATATGGTGGCGCC 1775
BSNT_01836___ 1890 AGGGTCTGATATCCCGAGCTTAGTGCCGAACGGAAATGTCACGTACATGA 1939
.||..|.|||||.||.|||.|.||.|||.||||.||||||||.||.||||
BL02396___wpr 1776 GGGAACCGATATTCCAAGCCTCGTTCCGGACGGGAATGTCACTTATATGA 1825
BSNT_01836___ 1940 GCGGAACGTCTATGGCGACGCCGTATGCTGCCGCTGCTGCAGGATTGCTG 1989
|||||||.||.||||||.|||||.|.|..||.|||||.||||||.|.||
BL02396___wpr 1826 GCGGAACATCGATGGCGGCGCCGCACGTGGCAGCTGCAGCAGGACTTCT- 1874
BSNT_01836___ 1990 TTTG-CTCAAAA----TCCTAAGCTGAAAAGAACAG-AAGTTG--AGGAT 2031
|||| |.||.|| |||| |||||..|| || ||.|.| ||..|
BL02396___wpr 1875 TTTGTCACAGAATCCGTCCT----TGAAACCAA-AGCAAATCGCAAGCCT 1919
BSNT_01836___ 2032 ATGTTGAAAAAGACGGCAGATGATATTTCCTTTGAAAGTGTCGATGGCGG 2081
| ||||...|||||.|||..|||.|..|.|||||| |
BL02396___wpr 1920 A--TTGACCGAGACGACAGCAGATGTGGCATTTGAA-------------G 1954
BSNT_01836___ 2082 AGAAGAAGAGTTGTATGAC---GATTATGGC---------GATCCGATTG 2119
||.||.|.|.|...| || |||||||.| ||.|||..||
BL02396___wpr 1955 AGCAGGATAATCCAA--ACCCGGATTATGACCTGGATATAGAACCGGCTG 2002
BSNT_01836___ 2120 ---AAATTCCGAAGACACCTGGTGTAGACTGGCATTCAGGCTACGGG--- 2163
|||||| ||.|.|.| ||| ||| |.||.||||
BL02396___wpr 2003 CACAAATTC--------CCGGATAT-GAC-----TTC-GTCTCCGGGTGG 2037
BSNT_01836___ 2164 ---CGGCTGAACG----TCATGAAGGCTGTCAGCG-----CAGCTGATTT 2201
.|||||||.| |||| ||.|.||||| .||||||
BL02396___wpr 2038 GGAAGGCTGAATGTTTTTCAT----GCAGCCAGCGTTTTTGAGCTGA--- 2080
BSNT_01836___ 2202 ACAGCTTAAGG-TCAACAAGCTGGAAAGCACTCAAACAGCTGTCAGAGG- 2249
||| |.|||| |||.|..|.|..|||.|.| ||.||.||.||.|.|||
BL02396___wpr 2081 ACA--TGAAGGTTCATCCCGTTTTAAACCGC-CATACGGCAGTGACAGGC 2127
BSNT_01836___ 2250 ------AAACGCGAAG-GAAGG-CACA--CTTATCGAGGTGATGAACGGC 2289
|||.|||..| ||.|| ||.| ||| .||||| ||| ||
BL02396___wpr 2128 ACAGCCAAAAGCGGTGTGACGGTCAAAATCTT-GCGAGG----GAA--GC 2170
BSNT_01836___ 2290 AAAAAGAAACTCGGCAGCGCCAAAGCCGGAAA---AGACAATGCG--TTC 2334
|| ..|.|.||.|..|.||..|||||||| ||.| ||| |||
BL02396___wpr 2171 AA----GTATTGGGGACGGGCACGGCCGGAAAATCAGGC---GCGTTTTC 2213
BSNT_01836___ 2335 AAGGTTAATATCGCGCCTCAAAAACAGGATCAAGTACTGTATGTGAAAGC 2384
| ||.||.||..||.|.||.||...||..|||||.||..|||| .||
BL02396___wpr 2214 A--GTGAAAATTCCGGCCCAGAAGGCGGGGCAAGTTCTTCATGT---CGC 2258
BSNT_01836___ 2385 AACAAAAGGCGAT---GCGAAAACATCGTATAAAGTTGTCGTCGTCAAAG 2431
..||...|||.|| |||.||||.|||...|.|...|||||.|..||||
BL02396___wpr 2259 GGCATCGGGCCATCAGGCGGAAACCTCGCTCAGAACCGTCGTGGAAAAAG 2308
BSNT_01836___ 2432 ----GAAAA--CCTTCCGGCACACCGAAAGTAAACGCGGTGAAAACG--- 2472
||||| ||.||||.| |||||| |..|||
BL02396___wpr 2309 CGCCGAAAAACCCGTCCGTC-----------AAACGC----ATCACGAAC 2343
BSNT_01836___ 2473 AAGGATACGGCAGTAAAAGG--GAA-GGCAAACAGCAAAGCGATGATCAG 2519
||.|||||.||.||||..|| ||| ||||..|.||.| .|.|||||.
BL02396___wpr 2344 AAAGATACTGCCGTAACGGGTAGAACGGCAGCCGGCTA---CACGATCAA 2390
BSNT_01836___ 2520 AGTGAAAAACAAATCAAAGAAAGTCATTGCTTCTGC----CAAAGCTGAC 2565
||||||||||...||.||.|||||.||.|| || ||||||.||.
BL02396___wpr 2391 AGTGAAAAACGCGTCCAAAAAAGTGATCGC----GCAAGGCAAAGCGGAT 2436
BSNT_01836___ 2566 GCAAAAGGAACGTTTTCGGTGAAAATCAAAAAACAAAAAGCCGGAA---- 2611
|||...|||.|||||...|||||||||||.||.|||||| |||
BL02396___wpr 2437 GCATCCGGAGCGTTTAAAGTGAAAATCAACAAGCAAAAA----GAATATG 2482
BSNT_01836___ 2612 CGGTGCTGTACGTCACGG---CTGCGGAT----ACAGATAAAAAAGAAAG 2654
|.||..||||.|||.|.| ||||.||| |||| ||||||
BL02396___wpr 2483 CCGTTTTGTATGTCTCCGCATCTGCTGATGACCACAG-------AGAAAG 2525
BSNT_01836___ 2655 C-----------AAGGAAG----------------------------CAA 2665
| ||.||.| |.|
BL02396___wpr 2526 CGGCGATGTCAAAATGACGGTGGCTGACGTCATCCCGCCAGGCGCCCCGA 2575
BSNT_01836___ 2666 AAGTT------GTT---GTTGAAAAGTAA--------------------- 2685
||||| ||| |.| |||||||.
BL02396___wpr 2576 AAGTTTATCAGGTTTCCGAT-AAAAGTACGGTGATTCAGGGAAAAACAGA 2624
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2625 AGCAAACGCGCAAGTCAGCGCAAAAGCTAAAGGAAAGACGATCGCTTCCG 2674
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2675 GCAAAGCGAACGGAAAAGGTGAATACAAGCTGAAAATCAGCAGGCAAAAA 2724
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2725 GCCGGAACCGTCATCGGTGTAACAGCAAAGGATAAAGCCGGAAATGTCAG 2774
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2775 CAAAGCGACAGCCGTCACTGTGCTTGACAAAACCCCGCCGTCTGCGCCGA 2824
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2825 AGGTGAATCCGGTGACAAACAAGAGCACGGCCGTTAAGGGGAAAGCAGAA 2874
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2875 GCGAACGCCGCCATCATCGTCAAATCAGGAAAGAAAACGATCGGAACCGG 2924
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2925 CAAGGCCGATAAAAAAGGCGCGTTTTTTGTCAAAATAAAAAAACAAAAGG 2974
BSNT_01836___ 2685 -------------------------------------------------- 2685
BL02396___wpr 2975 CAAACACCGTTTTAGCGGTCACTGCAAAAGATAAAGCCGGCAATACGAGC 3024
BSNT_01836___ 2685 ------------------------------------ 2685
BL02396___wpr 3025 AAAGTGAGCAAAATAAAAGTCAAAAAGGCAAAATAA 3060
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