Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03940 and BL02395
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03940___yrhH.1.5803.seq
# -bsequence dna-align/BL02395___yrhH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03940___yrhH-BL02395___yrhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03940___yrhH-BL02395___yrhH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03940___yrhH
# 2: BL02395___yrhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 684
# Identity: 342/684 (50.0%)
# Similarity: 342/684 (50.0%)
# Gaps: 219/684 (32.0%)
# Score: 720.5
#
#
#=======================================
BSNT_03940___ 1 ATGCTAGAA-AATAGACTCTATAAACGAT--CGGA-------------TT 34
.||.|.||| ||| |.||....||||.|| |||| ||
BL02395___yrh 1 GTGTTTGAACAAT-GGCTTGGAAAACAATTGCGGAGCCCGAGAGGCATTT 49
BSNT_03940___ 35 TTTGGAAAT-----------TATTTTCTCGGAAATATAAGCTAACCA--- 70
|.|.||||| |||.| ||||| |.|..||.||
BL02395___yrh 50 TGTCGAAATGGGTCGCGTCATATAT----GGAAA---ACGGGAATCATGA 92
BSNT_03940___ 71 ---AAAC-AATTGAGCAT-ATGATGATTGACTCTATAGATAT------AC 109
|||| |||.||.||| | |||..||.||||| .|
BL02395___yrh 93 TATAAACGAATGGACCATCA---------ACTTGATGGATATCTGTCCGC 133
BSNT_03940___ 110 AAGAAAATGACAGAATTTTAGAAATTGGAATTGGA-----AACGGCACTG 154
||||..|.||..|.|||||.||||..||| |.||||||
BL02395___yrh 134 ------ATGAGCGCATCCTTGAAATCGGAACGGGAAGCGGAGCGGCAC-- 175
BSNT_03940___ 155 TCTTTAAAAGCATAACCAAGAAACTAAAAAAGGG-----AAGCCTAAAAA 199
||.|..|.||..|..|||..|| ..|||| |.|||| ...
BL02395___yrh 176 ---TTTATCGGATTGCGGAGATGCT---TGAGGGCGGCAAGGCCT--GCG 217
BSNT_03940___ 200 GCATTGATCCTTCAAAACGAAAGGT-AAGACAGATATCACGTGCGAATC- 247
||||.||..|.||||||.|.|.||| ||| |||..|...|| |||||||
BL02395___yrh 218 GCATAGACGCATCAAAAAGCATGGTCAAG-CAGGGAATGCG-GCGAATCC 265
BSNT_03940___ 248 -------GAAAGAACATGGGGAACGGGGAGGTTTTT----CATGGCTATC 286
|||||||.|.||..||...|.| || |.||||.||.
BL02395___yrh 266 GTCATGTGAAAGAAGAAGGAAAAGCCGAA-----TTAAAGCTTGGCCATG 310
BSNT_03940___ 287 CAGAGGACATTCCCTTTGATGACCGTACCTTTAATAAAGTCTTTTC---- 332
|.||..|.|||||.|.|...||.|||.|.|||.|||||||.|||||
BL02395___yrh 311 CCGAACAAATTCCTTATCCGGATCGTTCTTTTCATAAAGTATTTTCAGTC 360
BSNT_03940___ 333 -------TTTACAT----ACGG--TTCAAAGCTGCACCAATATTAGGCTT 369
||||..| |||| |||||| |..
BL02395___yrh 361 CACACCATTTATTTTTGGACGGATTTCAAA-----------------CAG 393
BSNT_03940___ 370 GCATTAAGAGAAATTTACAGGGTGCTTCAAATTGACGGC---CGGTTT-- 414
|||||||.||||||||||.|.||..|.||..|||||||| |.||||
BL02395___yrh 394 GCATTAAAAGAAATTTACCGTGTTTTACAGGTTGACGGCACGCTGTTTCT 443
BSNT_03940___ 415 -----TATATCAGTATTGACA----CAAATACCGGTGAAAAAAAGAAAA- 454
|..|||.|.|..|.|| .|||.|.| ||||||||.||||
BL02395___yrh 444 CGCTGTGCATCTGGAAGGGCAAATGAAAAAATC---GAAAAAAACAAAAG 490
BSNT_03940___ 455 -------CGTATATT-----------------CAACTGCT----GAAAGA 476
|.||||.| |||||||| |||||
BL02395___yrh 491 GCTTTTCCTTATACTCAGAAGAGCAAATCAAGCAACTGCTTGAGGAAAG- 539
BSNT_03940___ 477 CCAGCATTTCAGGGATCTTTCTGTTATCAGGCG-------TG-------A 512
.||||||||.|| .|||| || || |
BL02395___yrh 540 ---CCATTTCAGAGA---------CATCA--CGGTACATATGAACAAAAA 575
BSNT_03940___ 513 TTCCTGTCTATGTATTATGGCTGTTAAATAA--- 543
||.||| .||.|||...||.||.||||.|
BL02395___yrh 576 TTACTG---CTGCATTTCTGCGGTAAAATCATGA 606
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