Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06195 and BL02376
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_06195___yyxA.1.5803.seq
# -bsequence dna-align/BL02376___yyxA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06195___yyxA-BL02376___yyxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06195___yyxA-BL02376___yyxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06195___yyxA
# 2: BL02376___yyxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity: 864/1254 (68.9%)
# Similarity: 864/1254 (68.9%)
# Gaps: 93/1254 ( 7.4%)
# Score: 2792.5
#
#
#=======================================
BSNT_06195___ 1 ATGGTGGA--TTACGAACGTGAGGAAGAACATACTACTCCT----GAACA 44
||||| ||| |.|.|||.||.|||.| |.||.| |||.|
BL02376___yyx 1 ---GTGGAGTTTA--ATCATGATGAGGAAAA----ATTCGTTCGGGAAAA 41
BSNT_06195___ 45 GCCAAAGAGAAGCAAAAAAGGATATTTTCTTTCGAGTCTGATTGGCGTGA 94
|||...||||||....|.|.|.|.|||..||||.||.|||.|.||||...
BL02376___yyx 42 GCCGGTGAGAAGTTGGAGAAGCTTTTTGTTTTCAAGCCTGGTCGGCGCCG 91
BSNT_06195___ 95 TTGTCGGTGCCGTATTAATGGCGTTTATCATGCCGTACCTTTCAAATGAA 144
|..||||.||..|.||||..|.||||..|.|||||||.||.||..| |.|
BL02376___yyx 92 TCATCGGCGCTCTTTTAACAGTGTTTGCCTTGCCGTATCTCTCGCA-GCA 140
BSNT_06195___ 145 GGGCTGGATACAGGCGCCTTAGATCAGCAGCAAAACAACAA--------- 185
|||.|||.| |||.| ||.|.|.||||..||.|.|
BL02376___yyx 141 GGGATGGCT------GCCGT--ATAATCTGCAAGTCATCGAAGCGCGCGG 182
BSNT_06195___ 186 TGGCCGGGAATCA-ATCAGGACGG------------TGAAT--GTCAGTG 220
.||||..|.|.|| |.||||.||| ||.|| ||||..|
BL02376___yyx 183 CGGCCAAGGAGCACAGCAGGGCGGGACGGTCCGCAATGTATCCGTCAACG 232
BSNT_06195___ 221 TCAACAATGCCGTCAC-CAAGATTGTCAGCAATGTGTCGCCCGCCGTTGT 269
|.||.||||..||||| ||| ||.|||...||.||.||.....|.|||||
BL02376___yyx 233 TGAATAATGAAGTCACGCAA-ATGGTCTCTAAGGTTTCTGATTCTGTTGT 281
BSNT_06195___ 270 CGGTGTTGTGAACATCCAAAAATCAGATATTTGG---GGAGAGAGCGGCG 316
|||.|||.|.|||||||||||..|||.|.|.||| ||.|| |.|||
BL02376___yyx 282 CGGCGTTATCAACATCCAAAAGACAGGTGTATGGGATGGTGA---CAGCG 328
BSNT_06195___ 317 AGGCTGGGAGC-GGCTCTGGCGTCATCTATAAGAAAAATGACAACTCCGC 365
|.|| ||||.| |||||.|||||.||.|||||.||..|.|.||||.|..|
BL02376___yyx 329 AAGC-GGGAACAGGCTCGGGCGTTATTTATAAAAAGGACGGCAACACATC 377
BSNT_06195___ 366 TTATGTCGTGACCAACCATCATGTCATCGAAGGCGCTTCCCAAATTGAAA 415
..|..|.|||||.|||||.||||||||.|||||.||.||||||||.||||
BL02376___yyx 378 CCACATTGTGACAAACCACCATGTCATTGAAGGGGCGTCCCAAATAGAAA 427
BSNT_06195___ 416 TCAGCTTGAAAGACGGTTCACGTGTATCAGCTGATCTTGTCGGCAGCGAC 465
|||||.||||.|||||..||||..|..|.||..|.||..||||||||||.
BL02376___yyx 428 TCAGCCTGAATGACGGAACACGGATTCCGGCAAAACTGATCGGCAGCGAT 477
BSNT_06195___ 466 CAGCTGATGGACCTTGCCGTTTTACGGGTGAAAAGCGATAAAATTAAAGC 515
.||||||||||.||.|||||..|.|..||.||.|||.|.|||||.|||||
BL02376___yyx 478 AAGCTGATGGATCTGGCCGTCCTGCAAGTCAACAGCAACAAAATAAAAGC 527
BSNT_06195___ 516 AGTCGCCGATTTCGGAAATTCAGATAAAGTGAAGTCTGGCGAGCCGGTTA 565
||..|||||.||.|||.||||.||||||||||||.|.||||||||.||.|
BL02376___yyx 528 AGCTGCCGAATTTGGAGATTCTGATAAAGTGAAGACAGGCGAGCCTGTCA 577
BSNT_06195___ 566 TTGCGATCGGGAACCCGTTAGGCCTTGAGTTTGCAGGCTCTGTCACACAA 615
|.|||||.||.||||||.|.|||||..|||||.||||||||||.||||||
BL02376___yyx 578 TCGCGATTGGAAACCCGCTCGGCCTGCAGTTTTCAGGCTCTGTTACACAA 627
BSNT_06195___ 616 GGCGTCATCTCAGGTACGGAGAGGGCGATCCCAGTGGATTCAAACGGTGA 665
||..||||||||||.||.||..|.||..|.||.||.|||||.|||||.||
BL02376___yyx 628 GGAATCATCTCAGGAACCGAACGCGCTGTGCCGGTCGATTCCAACGGAGA 677
BSNT_06195___ 666 TGGACAGCCTGACTGGAATGCAGAAGTCCTGCAAACAGATGCGGCCATTA 715
.||||||||.||||||||.||.|||||.|||||.||.|||||.|||||||
BL02376___yyx 678 CGGACAGCCGGACTGGAACGCCGAAGTACTGCAGACGGATGCTGCCATTA 727
BSNT_06195___ 716 ACCCTGGGAACAGCGGCGGCGCTTTGTTAAATATGGATGGGAAGGTCATT 765
||||.||.||||||||.||||...||||.|||||.|||||.||.|||||.
BL02376___yyx 728 ACCCGGGTAACAGCGGAGGCGGGCTGTTTAATATTGATGGAAAAGTCATC 777
BSNT_06195___ 766 GGCATCAATTCAATGAAAATTGCCGAGTCGGCGGTTGAAGGGATTGGCCT 815
|||||.|||||.||||||||.||.||.||.||.||.|||||.||.||.||
BL02376___yyx 778 GGCATTAATTCGATGAAAATCGCTGAATCAGCCGTCGAAGGCATCGGTCT 827
BSNT_06195___ 816 GTCGATTCCATCTAAGCTCGTGATCCCTGTGATAGAGGATTTAGAGAGAT 865
|...|||||..|.||.||.|..||.||.||.||.||.|||||.||.|..|
BL02376___yyx 828 GAGCATTCCGGCCAACCTTGCCATTCCGGTTATCGAAGATTTGGAAACGT 877
BSNT_06195___ 866 ACGGAAAGGTCAAACGCCCGTTCCTTGGCATTGAGATGAAATCCCTAAGC 915
||||..|.||.|.|||.||||..||.||.||||||||||||||.||..||
BL02376___yyx 878 ACGGTGAAGTGAGACGGCCGTATCTCGGAATTGAGATGAAATCACTTGGC 927
BSNT_06195___ 916 GACATCGCAAGCTATCATTGGGATGAAAC-ATTAAAGCTTCCTAAGAACG 964
||.|||||||||||.||.|||.|.||||| .||||| ||.||.||.||||
BL02376___yyx 928 GATATCGCAAGCTACCACTGGCAGGAAACGCTTAAA-CTGCCGAAAAACG 976
BSNT_06195___ 965 TCACCAAT--GGAGTGGTTGTGATGGGTGT--AGACGCCTTTTCACCTGC 1010
|.|| || ||.||.|||||||||||||| ||.|| .|.||.|||||
BL02376___yyx 977 TAAC--ATCAGGCGTAGTTGTGATGGGTGTTCAGCCG--GTATCTCCTGC 1022
BSNT_06195___ 1011 CGGAAAAGCAGGGCTGAAGGAACTGGATGTCATCACGGAATTTGACGGAT 1060
.||.|.|||.||.|||||.||.||.|||||||||...||||||.||||..
BL02376___yyx 1023 AGGCAGAGCCGGTCTGAAAGAGCTCGATGTCATCGTCGAATTTAACGGTG 1072
BSNT_06195___ 1061 ACAAAGTAAATGATATTGTTGACCTGCGAAAACGGCTTTATCA-GAAAAA 1109
||...||..|.|||||.|||||.|||||.|||..|||||| || .|||||
BL02376___yyx 1073 ACCGTGTTTACGATATCGTTGATCTGCGTAAAAAGCTTTA-CACCAAAAA 1121
BSNT_06195___ 1110 AGTCGGTGACCGGGTGAAGGTGAAGTTTTAC---CGCGGCGGAAAAGAAA 1156
.|||||.|||..|||.||..|.|| .||| ||.|||||||||||||
BL02376___yyx 1122 CGTCGGCGACAAGGTAAAAATCAA---ATACCTGCGGGGCGGAAAAGAAA 1168
BSNT_06195___ 1157 AATCTGTAGACA-------TCAAGCTGTCCTCCGCAGACCAATTAGGCAG 1199
||||| |.||||||.| ||| |..|||||||||.||
BL02376___yyx 1169 -------AGACAACAGAAGTAAAGCTGAC--CCG-ATCCCAATTAGGAAG 1208
BSNT_06195___ 1200 TTAA 1203
.|.|
BL02376___yyx 1209 CTGA 1212
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