Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00034 and BL02368
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:41
# Commandline: needle
# -asequence dna-align/BSNT_00034___yaaH.1.5803.seq
# -bsequence dna-align/BL02368___yaaH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00034___yaaH-BL02368___yaaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00034___yaaH-BL02368___yaaH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00034___yaaH
# 2: BL02368___yaaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1364
# Identity: 942/1364 (69.1%)
# Similarity: 942/1364 (69.1%)
# Gaps: 124/1364 ( 9.1%)
# Score: 3130.5
#
#
#=======================================
BSNT_00034___ 1 ---------------------------------GTGGTAAAACAAGGCGA 17
||.||.|||..||||||
BL02368___yaa 1 ATGAGAAAGGAGGCGTTTCCCATTCAGATTTATGTCGTGAAAAGAGGCGA 50
BSNT_00034___ 18 CACTCTTTCTGCTATCGCTTCACAA----TACAGAACAACCGCAAATGAG 63
.||.||||.....||||| .|| |||.|||||||.|..|||||.
BL02368___yaa 51 TACCCTTTACCAAATCGC----GAATCGTTACCGAACAACAGTTAATGAA 96
BSNT_00034___ 64 ATCGCTGAAACGAATGAAATACCGAATCCCGACA--GCCTTGTTGTCGGA 111
||.|..|..|||||||||||.||||| ||||| | |.||||||||||||
BL02368___yaa 97 ATTGTCGCGACGAATGAAATTCCGAA-CCCGA-ATCGGCTTGTTGTCGGA 144
BSNT_00034___ 112 CAAACCATTGTCATTCCAATAGCTGGCCAGTTCTATGATGTGAAGCGAGG 161
||||||||.||.||.||.||.||.|||.||||.|||||.||.|..|..||
BL02368___yaa 145 CAAACCATCGTGATCCCGATCGCCGGCGAGTTTTATGAGGTCAGACAGGG 194
BSNT_00034___ 162 TGATACCCTGACATCTATC---GCCCGGCAGTTCAATACAACGGCAGCCG 208
.|||||..|..||||.||| ||.|| .||.||||...|..|.||.|
BL02368___yaa 195 AGATACATTAGCATCAATCGGAGCACG---CTTTAATATTTCTCCGGCTG 241
BSNT_00034___ 209 AGCTCGCAAGGGTTAACCGCATCCAGTTAAATACCGTGCT-----TCAGA 253
|.||.||.|||.|.||||||||.|||.|.|...||||..| ||.||
BL02368___yaa 242 AACTGGCGAGGATCAACCGCATTCAGGTTAGCGCCGTTTTACCGGTCGGA 291
BSNT_00034___ 254 TTGGTTTCCGTTTATACATCCCACCATC-TCCTAAACGAGACATCGAATC 302
.|| |.|.|| |||||||| ||.|| .||.|.|||..||||.|||.|
BL02368___yaa 292 CTG----CTGCTT-TACATCCC-CCCTCGGCCAAGACGGAACATTGAAAC 335
BSNT_00034___ 303 AAATGCTTATTTGGAGCCCCGAGGA-AATCAAGTCAGCGAAA------AT 345
|||.||.|||.|.||.||.||.||| || ||||.|| .|
BL02368___yaa 336 AAACGCCTATATCGAACCTCGGGGAGAA-------AGCGTAAGCCCCGCT 378
BSNT_00034___ 346 CTCCAGCAGGCGGCCAGAGAATCGTCGCCCTACTTAACGTACCTTGGCGC 395
.|.|||||||||||.|||||..|.|||||.|||||.||.||.||.|||||
BL02368___yaa 379 TTGCAGCAGGCGGCAAGAGAGGCTTCGCCATACTTGACCTATCTGGGCGC 428
BSNT_00034___ 396 ATTCAGCTTCCAGGCACAGCGTAACGGAACCTTAGTCGCACCGCC-TTTA 444
.||||||||||||||..||||..||||.||..|.|..|.|||||| .|.|
BL02368___yaa 429 TTTCAGCTTCCAGGCGAAGCGGGACGGCACACTCGAAGAACCGCCGCTGA 478
BSNT_00034___ 445 ACGAATTTAAGGAGCATT----ACAGAAAGTCAAAATACAACATTGATGA 490
||.|.||.||.|| .||| |||||.| ||..|.|||.| ||||||
BL02368___yaa 479 ACAACTTAAAAGA-AATTGCCGACAGACA-TCGGACTACGA---TGATGA 523
BSNT_00034___ 491 TGATTATAACGAACCTAGAAAACCAAGCATTCAGCGATGAACTTGGCCGG 540
|||||.|.||.||.||.|||||..||||.||||||||.|||||.|||.||
BL02368___yaa 524 TGATTGTCACCAATCTCGAAAATGAAGCTTTCAGCGACGAACTCGGCAGG 573
BSNT_00034___ 541 ATCCTTTTGAACGACGAAACTGTAAAAAGACGGCTT-CTAAATGAAATAG 589
|||.||.|||..|||.|.|.|||||||| ||.|.|| ||..||.|.||.|
BL02368___yaa 574 ATCATTCTGACGGACCAGAATGTAAAAA-ACAGATTGCTCGATAACATCG 622
BSNT_00034___ 590 T-----CGAGAATGCCAGAAGATATGGCTTCCGTGACATTCATTTCGACT 634
| || |||||||||||.||.||....|||||.|||||.||||
BL02368___yaa 623 TTGCAGCG-----GCCAGAAGATACGGTTTTAAAGACATCCATTTTGACT 667
BSNT_00034___ 635 TTGAATATTTGCGGCCCCAGGATAGAGAGGCTTATAATCAATTCCTCCGC 684
|.|||||.||..|||||.|.||||||||.||.||||||||.||..|.||.
BL02368___yaa 668 TCGAATACTTAAGGCCCGAAGATAGAGAAGCCTATAATCAGTTTTTACGG 717
BSNT_00034___ 685 GAAGCAAGGGATCTTTTTCATCGAG--AG---GGCTTAGAAATTTCTACG 729
||.||..||| .|...||||...|| || |||| .||.||.||.
BL02368___yaa 718 GATGCCCGGG-CCCGCTTCAGGCAGGAAGGCTGGCT----CATCTCAACC 762
BSNT_00034___ 730 GCTCTTGCTCCTAAAACAAGTGCAACACAG-CAGGGCAGATGGTATGAAG 778
||.||||||||.|||||.||.||....||| |.||.|| |||||||||||
BL02368___yaa 763 GCGCTTGCTCCGAAAACGAGAGCGGATCAGCCCGGACA-ATGGTATGAAG 811
BSNT_00034___ 779 CTCATGATTACAGGGCACATGGCCAAATTGTCGACTTTGTTGTTCTCATG 828
|.|||||||||.||||.||.|||.||||||||||.||.||.||.||.|||
BL02368___yaa 812 CCCATGATTACCGGGCCCACGGCGAAATTGTCGATTTCGTCGTGCTGATG 861
BSNT_00034___ 829 ACATATGAATGGGGCTATAGCGGCGGGCCGCCTCAAGCGGTTTCTCCAAT 878
||||||||.||||||||.|||||.|||||.||....|||||.||.||.||
BL02368___yaa 862 ACATATGAGTGGGGCTACAGCGGAGGGCCCCCGATGGCGGTATCGCCGAT 911
BSNT_00034___ 879 TGGACCTGTCCGTGATGTCATAGAATATGCTTTGACTGAAATGCCTGCGA 928
.||.||.|||||.||.||.||.|||||.||..|.||.||||||||.||.|
BL02368___yaa 912 CGGGCCCGTCCGGGACGTGATCGAATACGCACTCACGGAAATGCCCGCCA 961
BSNT_00034___ 929 ACAAAATTGTCATGGGCCAGAATTTATATGGATATGACTGGACGCTGCCA 978
.||||||.||||||||.|||||.||.||.||.||||||||||||||.||.
BL02368___yaa 962 GCAAAATCGTCATGGGACAGAACTTGTACGGCTATGACTGGACGCTCCCC 1011
BSNT_00034___ 979 TATACAGCAGGGGGAACTCCGGCAAGAGCAGTAAGCCCTCAGCAAGCCAT 1028
|||||..||||.|||.|.|.|||.||||||.|.|||||.||||..||.||
BL02368___yaa 1012 TATACGCCAGGCGGACCGCTGGCCAGAGCAATCAGCCCCCAGCGGGCGAT 1061
BSNT_00034___ 1029 TGTCATAGCTGATC-AGAACAATGCTTCCATTCAGTATGATCAAACCGCT 1077
||..||.|| ||.| ||||||||||..|.||.|||||.|||.||||.|||
BL02368___yaa 1062 TGAGATCGC-GAGCGAGAACAATGCGGCGATACAGTACGATGAAACAGCT 1110
BSNT_00034___ 1078 CAAGCTCCTTTCTTCCGCTATACTG---ATG-CAGAAAACAGAAGGCACG 1123
||.|||||...||||||||||||.| ||| |.|.||||| |||.|
BL02368___yaa 1111 CAGGCTCCAAACTTCCGCTATACGGACAATGCCGGCAAACA----GCATG 1156
BSNT_00034___ 1124 AGGTATGGTTCGAGGATGCCCGCTCGATTCAAGCAAAATTCAATCTGATT 1173
|.||||||||.||.||.||||||||||||||.|||||.||..||||||||
BL02368___yaa 1157 AAGTATGGTTTGAAGACGCCCGCTCGATTCAGGCAAAGTTTGATCTGATT 1206
BSNT_00034___ 1174 AAAGAGCTGAATTTAAGAGGCATCAGCTATTGGAAGCTGGGTCTTTCCTT 1223
|..||..||||||||||.||.|||||||||||||||||.||.||.|||||
BL02368___yaa 1207 AGGGAATTGAATTTAAGGGGAATCAGCTATTGGAAGCTCGGCCTGTCCTT 1256
BSNT_00034___ 1224 TCCACAAAACTGGCTGCTGCTGTCTGATCAATTTAATGTTGTCAAAAAGA 1273
.||.|||||||||||..||.|..|.|||||||||||||||||.|||.|||
BL02368___yaa 1257 CCCGCAAAACTGGCTCTTGATAGCCGATCAATTTAATGTTGTTAAAGAGA 1306
BSNT_00034___ 1274 CGTTTC---GATAA 1284
||||.| |.|||
BL02368___yaa 1307 CGTTCCCAAGTTAA 1320
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