Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00031 and BL02366

See Amino acid alignment / Visit BSNT_00031 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:41
# Commandline: needle
#    -asequence dna-align/BSNT_00031___dck.1.5803.seq
#    -bsequence dna-align/BL02366___dck.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00031___dck-BL02366___dck.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00031___dck-BL02366___dck.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00031___dck
# 2: BL02366___dck
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity:     478/679 (70.4%)
# Similarity:   478/679 (70.4%)
# Gaps:          62/679 ( 9.1%)
# Score: 1678.0
# 
#
#=======================================

BSNT_00031___      1 ATGAAGGAACATCATATCCCTAACAATTCAATTATTACAGTAGCAGGAAC     50
                     ||||..|.|.||.||||.||.||..||.|.||.|||||.||.||||||||
BL02366___dck      1 ATGAGTGTATATGATATTCCGAAAGATGCTATCATTACTGTTGCAGGAAC     50

BSNT_00031___     51 AGTAGGTGTCGGAAAATCGACTTTAACAAA--AACTTTAGCTAAACGGCT     98
                     .|||||.||.||.|||||.||.||.|||||  |.|||  ||.|||.||||
BL02366___dck     51 GGTAGGAGTGGGGAAATCCACATTGACAAAAGAGCTT--GCAAAAAGGCT     98

BSNT_00031___     99 TGGATTTAAAACATCGTTGGAGGAAGTCGATCATAATCCATACTTGGAAA    148
                     .|||||||||||.||..|.||.||.||||...||||.||.||.|||||..
BL02366___dck     99 CGGATTTAAAACCTCTCTTGAAGAGGTCGTGAATAACCCTTATTTGGAGG    148

BSNT_00031___    149 AGTTCTATCATGATTTTGAACGTTGGAGCTTTCACCTTCAAATTTACTTC    198
                     ..||.||.||.||.||||||||.||||||||||||||.||.||||.||||
BL02366___dck    149 CTTTTTACCAAGACTTTGAACGCTGGAGCTTTCACCTGCAGATTTTCTTC    198

BSNT_00031___    199 TTAGCTGAACGCTTCAAAGAACAGAAAACA-ATTTTTGAAGCCGGCGGAG    247
                     ||.||.||.|||||||||||||| ||||.| ||||..|||.|.|||||.|
BL02366___dck    199 TTGGCAGAGCGCTTCAAAGAACA-AAAATACATTTACGAATCGGGCGGCG    247

BSNT_00031___    248 GTTTTGTACAGGATCGTTCGATTTATGAAGATACAGGAATTTTCGCAAAA    297
                     |.|||||.|||||.|||||.|||||||||||||||||.||||||||.|||
BL02366___dck    248 GATTTGTTCAGGACCGTTCAATTTATGAAGATACAGGCATTTTCGCCAAA    297

BSNT_00031___    298 ATGCATGCTGATAAAGGGACAATGTCAAAGGTTGATTATAAGACTTACAC    347
                     |||||.||.||||||||.|||||||||||.||.||.||||||||.||.||
BL02366___dck    298 ATGCACGCCGATAAAGGCACAATGTCAAAAGTCGACTATAAGACGTATAC    347

BSNT_00031___    348 AAGCCTTTTCGAAGCAATGGTAATGACACCGTATTTCCCACACCCAGATG    397
                     .|||||.||.|||||.|||||.|||||.||.||.|||||.|.|||.||.|
BL02366___dck    348 GAGCCTGTTTGAAGCGATGGTCATGACGCCTTACTTCCCCCGCCCCGACG    397

BSNT_00031___    398 TGTTGATCTATTTAGAAGGAGATCTGGAGAAC-ATTTTAAACCGGATTGA    446
                     |.||..||||||||||.||.|||.|||| ||| |||.|..||||.||..|
BL02366___dck    398 TTTTAGTCTATTTAGAGGGCGATTTGGA-AACGATTCTCGACCGCATCCA    446

BSNT_00031___    447 ACAACGCGGCCGTGAGATGGAGCT-TCAGACAAGCAGGTCTTATTGGGAA    495
                     |.|||||||.||.||.|||||.|| |.| ||...|||.||.|||||||||
BL02366___dck    447 AAAACGCGGACGGGAAATGGAACTGTTA-ACCGACAGATCGTATTGGGAA    495

BSNT_00031___    496 GAAATGCATACAC--GCTACGAGAACTGGATAAGCGGTTTTAATGCCTGC    543
                     ||||||  |||||  |.||.||.||||||||.|||||.|||||.|||||.
BL02366___dck    496 GAAATG--TACACTAGGTATGAAAACTGGATCAGCGGATTTAACGCCTGT    543

BSNT_00031___    544 CCTGTTTTAAAACTTCGCATTGAAGATTATGATCTTCTGAACGACGAAAA    593
                     ||.|||.|.|.|.|....|||||.||.||.||.||..|.|||.||..|..
BL02366___dck    544 CCGGTTGTCAGAGTCAATATTGATGAATACGACCTGTTCAACAACTCAGC    593

BSNT_00031___    594 CTCGATTGAAAATATTGTAGATCAAATTGCTTCAGTTATTCATGATAATC    643
                     |||            |.|.||||.||             ||||     |.
BL02366___dck    594 CTC------------TCTCGATCCAA-------------TCAT-----TG    613

BSNT_00031___    644 AAAAAA--AGTGA----------------    654
                     ||||||  |||||                
BL02366___dck    614 AAAAAATCAGTGAAGCCATTCAAAGATAA    642


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.