Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04187 and BL02365
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_04187___ysfB.1.5803.seq
# -bsequence dna-align/BL02365.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04187___ysfB-BL02365.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04187___ysfB-BL02365.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04187___ysfB
# 2: BL02365
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1411
# Identity: 641/1411 (45.4%)
# Similarity: 641/1411 (45.4%)
# Gaps: 596/1411 (42.2%)
# Score: 1139.0
#
#
#=======================================
BSNT_04187___ 1 ATGTTTTTACAGCCGTTATTAGCGAAAAAAATTATT-GCTGAAGTTAAAA 49
||| .||||.|.|..||||..||| ||.||.| |
BL02365 1 ATG-------------AATTACCTATCAAAAGAATTGGCGGAGG-----A 32
BSNT_04187___ 50 AAATGTACGAACGTGAA----GTC-ATTATT--GTA-AAC---------A 82
||.||| |||| .||| ||| |||||| |.| ||| |
BL02365 33 AATTGT-CGAA--AGAACCATGTCGATTATTCGGCACAACATTAATATGA 79
BSNT_04187___ 83 CGG------ACGGTCTTATTATGG---CAGGCACAAACGATGAGCGTGTC 123
.|| ||||..||||.||.| |||| .||.||| ||
BL02365 80 TGGATGAAAACGGGGTTATCATCGCTTCAGG---------AGACCGT-TC 119
BSNT_04187___ 124 GGACAAT--TTCATGA------GGGAGCGCTTATCTGCGCAAAAGAAAGA 165
||.||| .|.|||| .||||| |||.||
BL02365 120 -GAGAATCGGTGATGAACACGCAGGAGC----------------GAAGGA 152
BSNT_04187___ 166 C------GCAGCGTGA-----TTATTA-CAAAA-----GAAG-ATGAAAC 197
| ||||| ||| ||||.| ||..| |||| ||| |
BL02365 153 CGCACTTGCAGC-TGAAAAGGTTATCAGCATCACGCCCGAAGAATG---C 198
BSNT_04187___ 198 AAGG--TTAAAAGGAGTGAAAGCAGGCATAAACCTCCC---TGTATTTTT 242
..|| ||||..|||..|||..|.|||.|||||||.|| .||||||
BL02365 199 TCGGCTTTAACGGGAACGAAGCCCGGCGTAAACCTTCCCATCGTATTT-- 246
BSNT_04187___ 243 TGACCATGATG---TGATTGCCGTCTTCGGGCTGACAGGTGAGCCTGCAG 289
||||||| |.||.|.||||.|.||..|.||.||...||||.|.|
BL02365 247 ----CATGATGAAATAATCGGCGTCATTGGAATCACGGGGCCGCCTTCTG 292
BSNT_04187___ 290 AGATTCAGCCATT-CGGAGAACTGCT-TCGAAAAATGACAG-------AA 330
| |.||||||.|| ||||||||| | || ||||||.||| ||
BL02365 293 A-AGTCAGCCGTTACGGAGAACT--TGTC--AAAATGGCAGCGGAGCTAA 337
BSNT_04187___ 331 CTGTTCATTAAGGAATCGC-GGCACTTAGAGCAATCCCAGTGGCGTGAGA 379
|.|| .||| | ||||.||..|.||| ..||| .|||.|
BL02365 338 CAGT-------CGAA---CAGGCATTTTTAACAA-AACAG----CTGACA 372
BSNT_04187___ 380 GAATGCTGGAGTCCTTTATGATCGATTGGCTGCAATTAAAGGAGTGGTCT 429
||| |||| ||||| ||
BL02365 373 ------TGG----------GATC--------------AAAGG------CT 386
BSNT_04187___ 430 CCCAGTTTTCTTGAGAAA-GCTCAGCTTCTTGGTGTTGACCTTTCTTCCC 478
||..| .||||| |.|||
BL02365 387 CCGCG-------AAGAAACGGTCA-------------------------- 403
BSNT_04187___ 479 GGCGCCAAATGATTCTTATTCAGGGGTATGAGTGGT----CACCTCATGA 524
.||||||| |||||||| ||.||.| ||.|.|.|||
BL02365 404 ---TCCAAATG------ATTCAGGG----GACTGATCTAGCATCCCTTGA 440
BSNT_04187___ 525 ----TATTGAAC-------------AAATGGCACGCAGCTGGAAATCC-T 556
| |||||| ||| ||..|.|||.||...|| .
BL02365 441 CTTCT-TTGAACGTGCAGAGCGATTAAA---CATACCGCTTGACGGCCAG 486
BSNT_04187___ 557 CGTAC----CCTGCGGATTTGTT--------CATCAGGTGGGGAAATGAA 594
||||| |.|| |||| ||||.|.| ||.|||||
BL02365 487 CGTACTTGTCTTG------TGTTTGAGCTCCCATCGGCT---GATATGAA 527
BSNT_04187___ 595 --CGGATTTTGATTAATCATGAAGTGCCGCAGCATGAACAAAGGGATCGG 642
|||..||| ||||| || |.|.||||.| |
BL02365 528 GCCGGCGTTT-ATTAA-----AA-------AACTTGAAAA---------G 555
BSNT_04187___ 643 CTTTTA--CG-GAAAATCCTTCACATTTGTTCGTTTGCCAATA------- 682
|.|||| || ||| |.||||||.| |||||||
BL02365 556 CATTTAACCGCGAA--------AGATTTGTAC----GCCAATATTTCTTT 593
BSNT_04187___ 683 --------CCGCA--------AGCAG------CCAATATA--CAG----- 703
.|||| .|||| |||.||.| |||
BL02365 594 AAAAGAGGTCGCAGTTATTCTGGCAGGCGCCCCCACTAAAAGCAGGTCTG 643
BSNT_04187___ 704 ---------CAGCTGGCGCCGGAAGGGCTGTCGCAAGCTCCAGCC--TG- 741
||||| .||||.||||| ||| ||||| ||
BL02365 644 ATCTCTTTTCAGCT-----TGGAACGGCTG------GCT-CAGCCAATGG 681
BSNT_04187___ 742 ---ACAGATTCATA-----------CGAGCAAGCGGAAAA-----AGC-G 771
|||| |||.| ||||||.||.||..| ||| |
BL02365 682 AAAACAG--TCAGAGGCGCGCTTGGCGAGCAGGCTGACCAGCTTCAGCAG 729
BSNT_04187___ 772 CTG-------GCTGTCAGCCTTAAGCG----AAAAACGC-CCATATT--T 807
||| .||.||| |||.| |.|||||| |.|.||| |
BL02365 730 CTGCCATTTTCCTATCA-----AAGTGCAAAACAAACGCTCAAGATTGCT 774
BSNT_04187___ 808 GAAGAGGATCTGAAGCTTGATATGTGTCTGACGGAGATCAGCCCGGGAAC 857
|||.|..|| ||.|| ||.|||.|..|.|
BL02365 775 GAAAACAAT-TGTAG-TTTATACGATTAT--------------------- 801
BSNT_04187___ 858 CCGAAACGAATTTCCG----------------CAAAGAGTATTAGGAGAG 891
||| ||.|||.|| ||||.|
BL02365 802 -CGA---GAGTTTGCGATTCCTGTTTTATTATCAAAAA------------ 835
BSNT_04187___ 892 GCGCTAGAGCATCAGGA-----------ACTTATGAATACGTTACGGACT 930
|||||||||.||| |||| |.||.||.|...|||..
BL02365 836 ----TAGAGCATCCGGATCAGGAGATTCACTT-TCAAAACATCTGGGATC 880
BSNT_04187___ 931 TTCTTTC--------ATCA------CGATTTGTCT--------------- 951
..||||| |||| |||.||..||
BL02365 881 GCCTTTCCCAAGCAGATCAAAAAGGCGAATTAACTCATACCCTCCTCTGC 930
BSNT_04187___ 952 ----TTGAAACAAACCGCAGAA------GATA-TGCA-----------TA 979
|.|||..||||.|| ||| ||.| |.|| ||
BL02365 931 TACATAGAAGAAAACGGC-GAAATCGGGGAAACTTCATCAAGACTCTTTA 979
BSNT_04187___ 980 TTCATATCAATACATTGCGTTATCGTCTGGCT----AAGGCTGAA----C 1021
||||...|||.|| |.|.|.|..|.|||| |||..|||| |
BL02365 980 TTCACCGCAACAC----CTTAAACTACCGGCTCAGAAAGATTGAATTGGC 1025
BSNT_04187___ 1022 AGCTGACGGGTT---------TACGTTTTGACCGTACCGAGGACATCGTC 1062
| |||||.| .|||.|||||| |||.|..||
BL02365 1026 A----ACGGGGTGTAATCCAAAACGGTTTGAC---------GACCTATTC 1062
BSNT_04187___ 1063 ACGATGTACGTTGCC----CTCTATTT------TTTAGATCAAGAT--AC 1100
|...||||....||| ||||.||| |||.|..||| || ||
BL02365 1063 AAACTGTATACAGCCATTACTCTTTTTTCACCCTTTTGTGCAA-ATGAAC 1111
BSNT_04187___ 1101 AA----AATAG 1107
|| ||
BL02365 1112 AATTTTAA--- 1119
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