Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00589 and BL02349
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00589___yciA.1.5803.seq
# -bsequence dna-align/BL02349___yciA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00589___yciA-BL02349___yciA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00589___yciA-BL02349___yciA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00589___yciA
# 2: BL02349___yciA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 519/1151 (45.1%)
# Similarity: 519/1151 (45.1%)
# Gaps: 490/1151 (42.6%)
# Score: 1346.5
#
#
#=======================================
BSNT_00589___ 1 ATGAATCAACATACG----CTGCTT----CCGAAAAA----AACG-GAGC 37
|||.| ||| ||||.| |||.|||| |||| .|.|
BL02349___yci 1 ATGGA-------ACGCAAACTGCATTTGCCCGCAAAACCCGAACGCCACC 43
BSNT_00589___ 38 GTCTTCAATACTTTGGATCGGTC--AGTCCGATCAAAGGCGAGAAACC-A 84
|.| .|||.|||||.||| || ||| |.|||||....||||| |
BL02349___yci 44 GCC------GCTTCGGATCTGTCGAAG-CCG-TGAAAGGAATAAAACCGA 85
BSNT_00589___ 85 GTGGAAAAAGAGAAAATGAAGGACCTGCAAAATATCA-GGAAGGATTATT 133
.| ||.|||||..|.||||||||..|.||||||| || .|||.||.||||
BL02349___yci 86 CT-GATAAAGAACAGATGAAGGATATTCAAAATA-CACCGAACGACTATT 133
BSNT_00589___ 134 TTTTTGACATTCAGCATGTAGGTGTCGCTAATGTGTCCCATCC-AGTCAC 182
|||||||||||.|.|||||.||||||.|.||.||.||.||||| |
BL02349___yci 134 TTTTTGACATTGACCATGTCGGTGTCTCAAACGTTTCGCATCCGA----- 178
BSNT_00589___ 183 AATCACTTCTGCCA-TGATGCCT-------GCCG-----AGCAAACAACG 219
||.|| | ||.|.||| |||| | |||||.|||
BL02349___yci 179 ------TTTTG--ATTGCTTCCTCGCTCAAGCCGTTTACA-CAAACGACG 219
BSNT_00589___ 220 ------GCTGCGAACTTTACAATGA--CTTGTAATTTGCCGAGAAATCAG 261
|||.....||||||.|.|| |||| ||.|..|.|..
BL02349___yci 220 ATCGGCGCTTTTTCCTTTACGACGAGCCTTG--------CGCGCGACCGC 261
BSNT_00589___ 262 AAGGGGATTAACATGAGCCGGTTAACAGAGCTGCTGCAAGTCTATC---- 307
||.||.||.||.||||||||..|.|||||.|.||||||...|||||
BL02349___yci 262 AAAGGAATCAATATGAGCCGCCTGACAGAACAGCTGCAGCGCTATCACGA 311
BSNT_00589___ 308 ATCAAAATGGCTGGATTCTCTCATT---TTCCTCTCTTCAGCAATTCAC- 353
|.||||.|||..|| || |||| ||.|||
BL02349___yci 312 AGCAAACTGGACGG---------TTGACTTCC-----------ATACACT 341
BSNT_00589___ 354 GAAAGAGCTTGCAGAA-------------AACATGGA---------CACA 381
||||||..||||| || ||.||||| |.||
BL02349___yci 342 GAAAGATTTTGCA-AAGGATTTAGCCGGCAATATGGAACAGGAAAGCGCA 390
BSNT_00589___ 382 TCAC--CTGCCTCAGTTGAAGTGAGGTTTCCGTGGTTTTTCGAACGGAAA 429
|| | ||.|.||||| |||||.||||.|||||||||.|..
BL02349___yci 391 TC-CGTCTCCGTCAGT----------TTTCCATGGTATTTCGAACGCATC 429
BSNT_00589___ 430 AGTCCGAAGCTTGAGAAA--------GCGGGTTTGATGCATGCTGATAT- 470
||.||| |||| .|.||..||||||||||.|||||
BL02349___yci 430 AGCCCG--------GAAACCAAATTGTCCGGACTGATGCATGCCGATATC 471
BSNT_00589___ 471 -ATTCATGTCTGTCACCTATC--GCAAAGATCAGCCGTTT---AAACAGC 514
|| |||.|.|||.|.|||| |.|||.| .||.|.||| ||||
BL02349___yci 472 CAT--ATGACAGTCTCTTATCATGAAAACA-AAGGCTTTTCGCAAAC--- 515
BSNT_00589___ 515 GTGCCGGCATCTCAGCAAAAGTAACGACTCTGTGCCCTTGCTCCAAGGAA 564
.|||||||||.|.||..|.|..|||||.||.||||||||.||.||.|||
BL02349___yci 516 -CGCCGGCATCACCGCCCATGCGACGACGCTCTGCCCTTGTTCAAAAGAA 564
BSNT_00589___ 565 ATCAGCGAATACAGTGCCCATAATCAGAGGGG-------AACGGTCA--- 604
||||||||||||||.||||||||.|||.|.|| || |.|||
BL02349___yci 565 ATCAGCGAATACAGCGCCCATAACCAGCGCGGCATAATCAA-GATCACCG 613
BSNT_00589___ 605 -GCATTT--------GGGCGGATATTC-------------ACCCG----- 627
||||.| .||||||.||.| |.|||
BL02349___yci 614 CGCATATCAATGAACAGGCGGAGATGCCGGACGATTTCAAAGCCGAGCTT 663
BSNT_00589___ 628 --------------------------------GCTGCATCGCTGCT---- 641
|||.||||.|..||
BL02349___yci 664 CTTGCCGCAGCGGAAACGAACGCAAGCGCAAAGCTCCATCCCGTCTTAAA 713
BSNT_00589___ 642 -----------------------------------------------GAT 644
|||
BL02349___yci 714 AAGACCCGATGAAAAGAGAGTGACTGAACAGGCTTATGAGAATCCAAGAT 763
BSNT_00589___ 645 TTGTTTGA-----------GCTT-------------------------GA 658
||| |.|| |||| ||
BL02349___yci 764 TTG-TAGAAGACGTCCTCCGCTTAACAGCTGCCGACTTATACGAAATGGA 812
BSNT_00589___ 659 ATGGGTGTCGGCCTTTGAGATTGAATGCCGCAATGAAGAATCGATCCATC 708
.|||.|.||.|||||||||||.||||||||.||.|||||||||||.||..
BL02349___yci 813 CTGGATCTCCGCCTTTGAGATCGAATGCCGGAACGAAGAATCGATTCACT 862
BSNT_00589___ 709 TCCACGATGCCTATGCGAAGCTGTGTTTTTCGAAGGAAGTGGATAAAATA 758
|.|||||||||...|||..|||.|..|||||.|| |.|| |||
BL02349___yci 863 TGCACGATGCCGTGGCGCGGCTATCGTTTTCCAA--ATGT---TAA---- 903
BSNT_00589___ 759 TGAAACTCTCATTATTCATTATTGCAGTTCTTATGCCAGCCTGCCTGCTG 808
BL02349___yci 903 -------------------------------------------------- 903
BSNT_00589___ 809 TCAACCTGCTCCGAACATGCAGAAGAACACGCAAGTATCAATACAAAGAA 858
BL02349___yci 903 -------------------------------------------------- 903
BSNT_00589___ 859 AACGGTCGAAAACATAACGGACGTTCGAAAAACAGCAAAAATAAGCATTG 908
BL02349___yci 903 -------------------------------------------------- 903
BSNT_00589___ 909 A 909
BL02349___yci 903 - 903
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