Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02612 and BL02321

See Amino acid alignment / Visit BSNT_02612 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_02612___ylxM.1.5803.seq
#    -bsequence dna-align/BL02321___ylxM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02612___ylxM-BL02321___ylxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02612___ylxM-BL02321___ylxM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02612___ylxM
# 2: BL02321___ylxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     261/339 (77.0%)
# Similarity:   261/339 (77.0%)
# Gaps:          21/339 ( 6.2%)
# Score: 1028.5
# 
#
#=======================================

BSNT_02612___      1 ATGTCACTCGAAAAGACAACGAGAATGAATTATCTGTTTGATTTTTATCA     50
                     |||.|.||.|||||.|||||||||||||||||..|.||.|||||.|||||
BL02321___ylx      1 ATGACGCTTGAAAAAACAACGAGAATGAATTACTTATTCGATTTCTATCA     50

BSNT_02612___     51 GTCGTTGTTGACGTCAAAACAGAAGAGCTATATGTCGCTTTATTATTTGG    100
                     |.||||||||||.||||||||.||.|||||.|||||||||||.||.||.|
BL02321___ylx     51 GACGTTGTTGACATCAAAACAAAAAAGCTACATGTCGCTTTACTACTTAG    100

BSNT_02612___    101 ACGATTTCTCCCTAGGCGAAATAGCCGAAGAATATGAGGTTTCAAGACAA    150
                     |||||||||||||.|||||||||||.|||||||||.|.||.|||||.||.
BL02321___ylx    101 ACGATTTCTCCCTTGGCGAAATAGCTGAAGAATATCATGTCTCAAGGCAG    150

BSNT_02612___    151 GCTGTTTATGATAACATCAAACGAACAGAAGCAATGCTTGAACAATATGA    200
                     ||.||.|||||.||.||||||||.||.|||||.||||||||.||||||||
BL02321___ylx    151 GCGGTCTATGACAATATCAAACGGACCGAAGCCATGCTTGAGCAATATGA    200

BSNT_02612___    201 AGAAAAGCTGCTCCTTTTGAAAAAGTTTCAGGAGCGTAAAGAGATGTTTA    250
                     |||||||||.||..|.||.|||||.|||||.|||||.|||.||||.|||.
BL02321___ylx    201 AGAAAAGCTACTTTTGTTTAAAAAATTTCAAGAGCGCAAAAAGATTTTTG    250

BSNT_02612___    251 ATAAGCTGAAGGAGCTTGCTTCCGGT-----TCAAAAGAAGAGGAAGAAA    295
                     |...|||||...||||..||..||||     |        ||||..|   
BL02321___ylx    251 AAGCGCTGAGAAAGCTGACTGACGGTCAGCCT--------GAGGCGG---    289

BSNT_02612___    296 TTACAG-CTCTGATTGAAGCGCTTGAGAAATTAGATTAG    333
                         || |.||||||||.|||||||||||||||||||||
BL02321___ylx    290 ----AGTCCCTGATTGATGCGCTTGAGAAATTAGATTAG    324


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