Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02598 and BL02308
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_02598___yloV.1.5803.seq
# -bsequence dna-align/BL02308___yloV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02598___yloV-BL02308___yloV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02598___yloV-BL02308___yloV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02598___yloV
# 2: BL02308___yloV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1720
# Identity: 1189/1720 (69.1%)
# Similarity: 1189/1720 (69.1%)
# Gaps: 107/1720 ( 6.2%)
# Score: 3882.0
#
#
#=======================================
BSNT_02598___ 1 TTGTCTATCAGAACAT-TAAACGGCAGAACCTTTGCCGAGATGATTCT-T 48
.|||||||..||| || |..|.||.|.|.|.|||||.||.|||||||| |
BL02308___ylo 1 GTGTCTATACGAA-ATCTGGATGGAAAAGCTTTTGCAGATATGATTCTGT 49
BSNT_02598___ 49 GCGGGAGCGCAGA--ATCTGTCTCAAAACGCCAGTGCAGTTGATGCACTG 96
.|| |||||.| ||||||||||||||||.|.||.|||||||||..|.
BL02308___ylo 50 ACG---GCGCACACCATCTGTCTCAAAACGCAAATGTAGTTGATGCGTTA 96
BSNT_02598___ 97 AACGTGTTTCCGGTGCCGGACGGTGATACGGGAACAAATATGAACCTGTC 146
|||||.||||||||.||||||||.|||||||||||.||.|||||.|||||
BL02308___ylo 97 AACGTATTTCCGGTTCCGGACGGAGATACGGGAACGAACATGAATCTGTC 146
BSNT_02598___ 147 GATGACTTCCGGAGCAAGAGAAGTTGAACAAATGGATACGGATGATATCG 196
||||||.|||||.||.|.||||||.||.|||||.||.||.|...||||||
BL02308___ylo 147 GATGACATCCGGTGCGAAAGAAGTGGAGCAAATCGACACCGCCAATATCG 196
BSNT_02598___ 197 GGAAGGTGG------GTTCCGCGTTATCTAAAGGGCTGCTCATGGGAGCA 240
|.||.|||| | || |.||.|..|||||.||.|||||.||.
BL02308___ylo 197 GCAAAGTGGCACAAAG--CC----TGTCAAGGGGGCTTCTGATGGGGGCG 240
BSNT_02598___ 241 CGCGGAAATTCAGGAGTTATCCTATCCCAATTGTTCCGCGGATTTAGCAA 290
||.|||||.||.||.||.||..|||||||..|||||.|.||.|||.||||
BL02308___ylo 241 CGGGGAAACTCGGGCGTCATTTTATCCCAGCTGTTCAGAGGCTTTGGCAA 290
BSNT_02598___ 291 AAGCATTGAAACGAAAAAAGAAATTAATGCACTTGAGTTTGCCGCTGCGC 340
|...||||||..||||...||||||||.||....||.||||||||.|||.
BL02308___ylo 291 ATCGATTGAACAGAAATCGGAAATTAACGCGAAAGAATTTGCCGCCGCGT 340
BSNT_02598___ 341 TGCAAGCAGGTGTAGACATGGCGTATAAAGCTGTCATGAAACCTGTAGAG 390
|.||.||.||.||.||||..||.||.||.||.|||||||||||.||.||.
BL02308___ylo 341 TCCAGGCCGGAGTGGACACCGCCTACAAGGCCGTCATGAAACCGGTCGAA 390
BSNT_02598___ 391 GGCACCATTTTAACAGTTGCAAAAGACGCTGCAAAAAAAGCGATGATCTT 440
|||||.||.||.||.|||||.|||||.||.|||||||||||..||.||..
BL02308___ylo 391 GGCACGATCTTGACGGTTGCCAAAGATGCCGCAAAAAAAGCAGTGCTCGC 440
BSNT_02598___ 441 AGCAGAAAAAGAAACCGATATCACTGCGCTGATGATTGCAGTGACAGAAG 490
.||..|||..||||||.||||||....|.|||||...||.||...|.|.|
BL02308___ylo 441 CGCTCAAACTGAAACCAATATCATCAAGGTGATGGAAGCTGTCGTAAATG 490
BSNT_02598___ 491 AAGCAGAGGCGTCTTTAAACCGCACCCCTGAATTGCTACCTGTCCTAAAG 540
||||.|||||.|||||..|.||.||.|||||..||||.||.||..|||||
BL02308___ylo 491 AAGCGGAGGCTTCTTTGGAGCGGACGCCTGAGCTGCTTCCGGTTTTAAAG 540
BSNT_02598___ 541 GAAGTAGGAGTTGTCGATAGCGGGGGCAAAGGCCTGCTCTGTGTGTATGA 590
|||||.||.||.|||||.|||||.||.|||||.||.||.|..||||||||
BL02308___ylo 541 GAAGTCGGTGTCGTCGACAGCGGCGGAAAAGGGCTTCTTTACGTGTATGA 590
BSNT_02598___ 591 AGGTTTCCTTGCTTCATTAAAAGGTGAAA--CTGTACCTCAGAAA---GC 635
|||.||.||.|||||.|||||.||.|||| ||.| ||.|.||| ||
BL02308___ylo 591 AGGGTTTCTCGCTTCTTTAAAGGGAGAAAAGCTTT--CTGATAAAGCGGC 638
BSNT_02598___ 636 AGTTCTTCCGTCACTTGACGACATGGTCAGCGCAGAGCATCACAAGAGCG 685
||.||||||||||.|.||.|||.|.||||||||.|||||.||.||.|.||
BL02308___ylo 639 AGCTCTTCCGTCATTGGATGACCTTGTCAGCGCCGAGCACCATAAAAACG 688
BSNT_02598___ 686 CGCAAAGCATGATGAATACCGAAGATATTGAATTTGGATTCTGTACCGAA 735
|.||||||...||||||||.|||||.||.|||||.||.|.|||.||.||.
BL02308___ylo 689 CTCAAAGCCACATGAATACTGAAGACATCGAATTCGGCTACTGCACGGAG 738
BSNT_02598___ 736 GTGATGGTTAGGCTTGATCAGACA-----AAAAGAGAGTTCGACGAAGGC 780
.|.|||||.|.||| .|||| ||||||.|.||..|.||||..
BL02308___ylo 739 TTTATGGTAAAGCT-----CGACAGCGGTAAAAGAAACTTTAATGAAGTT 783
BSNT_02598___ 781 ACGTTCAGGCAAGACCTCAGCCAGTTCGGAGATTCTCTGCTTGTGATTGC 830
.|||||.|.||.||..|.||||..|||||.|||||.||.||.||..|..|
BL02308___ylo 784 GCGTTCCGCCAGGATTTAAGCCGCTTCGGTGATTCGCTTCTCGTCGTCTC 833
BSNT_02598___ 831 GGATGA----ATCGCTGGCGAAGGTTCATATTCATGCTGAAGAGCC--GG 874
.||.|| ||| ||.|||||.||.||.|||||.|||.|.|| ||
BL02308___ylo 834 AGACGAAAATATC----GCCAAGGTGCACATCCATGCCGAATATCCAGGG 879
BSNT_02598___ 875 GAAACGTGTTAAACTACGCCCAGCATTACGGTGAATTGATCAAAATAAAA 924
||| ||..|.|..|||||.||..|.|||||....||.|||||.||.|||
BL02308___ylo 880 GAA--GTCATGACTTACGCGCAAAAATACGGCAGCTTAATCAACATGAAA 927
BSNT_02598___ 925 ATAGAAAATATGAGAGAACAGCATACCTCTATCATCAGTCAAGAAAGCAA 974
||.||||||||||||||||||||.|.|.|.||..|||| |.|||| |||
BL02308___ylo 928 ATCGAAAATATGAGAGAACAGCACAGCGCGATTCTCAG-CCAGAA--CAA 974
BSNT_02598___ 975 ACCTGCAGACAAC-------GAAATACCGCCGGCA---AAGCAGCCGTAT 1014
| |.|.|||||.| ||||.|.|||||||| ||.||||||||.
BL02308___ylo 975 A-CAGGAGACAGCACCGGCAGAAAAAGCGCCGGCAGATAAACAGCCGTAC 1023
BSNT_02598___ 1015 GGCATTGTGACTGTGGCGATGGGAGAAGGAATTTCAGACCTATTCAAAAG 1064
|||||.||.||.|||||.|||||.|||||.|||.|.||.||.|||.||||
BL02308___ylo 1024 GGCATCGTCACAGTGGCCATGGGTGAAGGGATTGCCGAGCTTTTCGAAAG 1073
BSNT_02598___ 1065 CATTGGCGCTTCTGTTGTGATTGAAGGCGGCCAGACCATGAACCCAAGCA 1114
|||.|||||..|....||.||.||||||||||||||.|||||.||.||||
BL02308___ylo 1074 CATCGGCGCCACAAAGGTCATAGAAGGCGGCCAGACGATGAATCCGAGCA 1123
BSNT_02598___ 1115 CTGAGGATATTGTTGATGCCGT-GAAGTCTGTAAATGCAGATACGGTATT 1163
|.||.||.||.|||.|.||..| .|||.| |..|||||.||.|||||..|
BL02308___ylo 1124 CGGAAGACATCGTTCAGGCGATAAAAGAC-GCCAATGCGGACACGGTCGT 1172
BSNT_02598___ 1164 TATCCTGCCTAACAACTCCAACATTATCATGGCTGCTAACCAAGCGGCCA 1213
.||.|||||.||.||.||.||||||.|||||||.||.|||||.||.||
BL02308___ylo 1173 GATTCTGCCGAATAATTCAAACATTGTCATGGCGGCGAACCAGGCCGC-- 1220
BSNT_02598___ 1214 GCGTAGTGGATG---------AACAGGTTTTTGTCATTCCTGCTAAAACG 1254
||||| ||||.||..|||||||.||..|.||.||.
BL02308___ylo 1221 -------GGATGTTGCCGGACAACATGTAATTGTCATCCCGACGAAGACC 1263
BSNT_02598___ 1255 GTTCCGCAAGGGATGTCAGCCCTGCTGGCTTTTAACCCGG----ATCAAG 1300
|||||.|||||.|||.|.||.|||||.||.||.||||||| .||
BL02308___ylo 1264 GTTCCTCAAGGAATGGCCGCACTGCTCGCATTCAACCCGGCCCTTTC--- 1310
BSNT_02598___ 1301 AAGCTGAAGCGAACGAGGCCAATATGCTAAGCGCCATTCAGC-AAGTAAA 1349
|||.||.|.|||.||.|||..||||||..|.||.| ||.|| |.||.||
BL02308___ylo 1311 -AGCGGACGAGAATGAAGCCGCTATGCTCGGTGCGA-TCGGCGAGGTGAA 1358
BSNT_02598___ 1350 AAGCGGACAGGTGACGTTCTCAGTCAGAGATACTCATATTGACGGTAAAG 1399
||||||||||.|.||.|...|.||||||||.||..|.||||||||.|..|
BL02308___ylo 1359 AAGCGGACAGATCACCTATGCGGTCAGAGACACAAACATTGACGGCATCG 1408
BSNT_02598___ 1400 ATATTAAAAAAGGCGACTTTATGGGCATTCTGAATGGAACGATTATCGGC 1449
||||||||||||||||.|||||||||||..|.||.|| ||..||||
BL02308___ylo 1409 ATATTAAAAAAGGCGATTTTATGGGCATATTAAACGG---GAAAATCG-- 1453
BSNT_02598___ 1450 ACTTCTGA-------AAATCAGCTGTCAGCCGCGAAAATGCTGCTGTCAG 1492
||..|| |.|.|||.|..||||.|||||||.||||.|..|||
BL02308___ylo 1454 --TTGAGACGGCGTCAGACCAGTTAACAGCAGCGAAAAAGCTGATCGCAG 1501
BSNT_02598___ 1493 AAATGATCGGAGAAGATGATGAAATCGTGACCATTCTATATGGTGAGGAT 1542
..|||||||..|||||....||||||||.|||.|..|..|.||.||.||.
BL02308___ylo 1502 GCATGATCGATGAAGACAGCGAAATCGTCACCGTGATCAAAGGGGAAGAC 1551
BSNT_02598___ 1543 GCGTCTCAGGAAGAAGCTGAGCAGCTTGAAGCGTTTCTCAGTGAAAAGTA 1592
||..|..|.|||||.||.||..|.||.|.|||.|...||||.||.|.|||
BL02308___ylo 1552 GCCCCGGAAGAAGAGGCCGAAGAACTCGCAGCCTACATCAGCGAGACGTA 1601
BSNT_02598___ 1593 CGAGGAGATTGAGGTTGAGATCCACAATGGGAAACAGCCTCTGTATTCGT 1642
|||.||..|.||.||.||..|.|||.|.||.||||||||.||||||||.|
BL02308___ylo 1602 CGAAGACGTCGAAGTAGAAGTGCACGACGGAAAACAGCCGCTGTATTCCT 1651
BSNT_02598___ 1643 ATATAGTTTCAGCAGAATAG 1662
|.||..|..|.|..|||||.
BL02308___ylo 1652 ACATTCTGGCTGTCGAATAA 1671
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