Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02593 and BL02305
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_02593___rpe.1.5803.seq
# -bsequence dna-align/BL02305___rpe.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02593___rpe-BL02305___rpe.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02593___rpe-BL02305___rpe.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02593___rpe
# 2: BL02305___rpe
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 491/671 (73.2%)
# Similarity: 491/671 (73.2%)
# Gaps: 31/671 ( 4.6%)
# Score: 1769.5
#
#
#=======================================
BSNT_02593___ 1 ATGATAAAGGTTGCACCATCTATTCTTTCCGCTGATTTTGCCGCTTTAGG 50
|||.||.|.|||||.||.|||||||||||.||.|||||||||..|.||||
BL02305___rpe 1 ATGGTATATGTTGCTCCTTCTATTCTTTCAGCCGATTTTGCCCGTCTAGG 50
BSNT_02593___ 51 CAATGAGATTAAAGATGTAGAAAAAGGCGGAGCCGATTGTATTCATATTG 100
..|.||.|||..||||||.|||.|||||||.|||||||..||.||.||.|
BL02305___rpe 51 GGAGGAAATTCGAGATGTTGAACAAGGCGGCGCCGATTTCATCCACATCG 100
BSNT_02593___ 101 ATGTTATGGACGGCCATTTTGTCCCGAATATCACAATCGGTCCGCTGATT 150
||||.||||||||||||||.||.||.||..|.||.|||||.|||||..|.
BL02305___rpe 101 ATGTGATGGACGGCCATTTCGTTCCCAACCTGACCATCGGGCCGCTTGTA 150
BSNT_02593___ 151 GTAGAAGCAGTCCGGCCGGTAACGGATCTGCCGCTTGATGTCCATTTAAT 200
||.|||||.|||||.|||.|.||.||.||.|||||.||.||.||||||||
BL02305___rpe 151 GTGGAAGCCGTCCGCCCGATCACTGAGCTTCCGCTCGACGTTCATTTAAT 200
BSNT_02593___ 201 GATAGAAGAGCCGGATCGTTATATCCCGGCTTTTGCGAAAGCAGGCGCAG 250
|||.||||.|||.||.||.|||||.||.||||||||.|||||.|||||.|
BL02305___rpe 201 GATCGAAGCGCCTGACCGCTATATACCTGCTTTTGCAAAAGCGGGCGCCG 250
BSNT_02593___ 251 ATATCCTGTCTGTACATGCTGAGGCATGTCCGCACCTGCACCGTACCATC 300
||||..||||.||.||||.|||.|||||.||||||||.|||.|.||.|||
BL02305___rpe 251 ATATTTTGTCCGTCCATGTTGAAGCATGCCCGCACCTTCACAGGACGATC 300
BSNT_02593___ 301 CAGCTCATTAAAGAGCAAGGAGTGAAGGCCGGAGTAGTTCTAAACCCGCA 350
||||||||.|||||||||||.||.||.||.|||||.||..|.||.|||||
BL02305___rpe 301 CAGCTCATCAAAGAGCAAGGGGTCAAAGCGGGAGTCGTCTTGAATCCGCA 350
BSNT_02593___ 351 TACTCCTGTTCA--AGTCATCGAGCATGTTTTCGACGATCTTGATCTTGT 398
|||.|||||.|| || |||||||||||..|.||.||.||||||||.||
BL02305___rpe 351 TACCCCTGTGCAGCAG--ATCGAGCATGTGCTTGAAGACCTTGATCTCGT 398
BSNT_02593___ 399 TCTTTTAATGACGGTGAACCCGGGCTTCGGCGGCCAGAAATTTATTCATT 448
..|.||.|||||||||||.||||||||||||||.|||...||||||...|
BL02305___rpe 399 ATTATTGATGACGGTGAATCCGGGCTTCGGCGGACAGTCGTTTATTTCCT 448
BSNT_02593___ 449 CAGTCCTTCCTAAGATAAAAGAGGTTAAGCGA-ATGGCGGATGAAAAAGG 497
|.|||||.||.||.||.|...||||.||| || |||||.||..|||||||
BL02305___rpe 449 CGGTCCTGCCGAAAATCAGGCAGGTCAAG-GAGATGGCTGAGCAAAAAGG 497
BSNT_02593___ 498 AAAAAAAGATCTGTTAATTGAAGTAGACGGCGGCGTCAACAAAGAAACCG 547
|......||||||.|.||||||||.|||||.||||||||||||.|.||.|
BL02305___rpe 498 ACTTGCCGATCTGCTGATTGAAGTGGACGGTGGCGTCAACAAAAATACGG 547
BSNT_02593___ 548 C-------TCCGCTCGTCATTGAAGCGGGCGCAAATTTACTCGTTGCCGG 590
| | || |||||||||||.||.||..|.||.||.||.||
BL02305___rpe 548 CAAGACAGT------GT-ATTGAAGCGGGAGCGAACCTGCTTGTCGCAGG 590
BSNT_02593___ 591 TTCAGCTGTTTATGGGCAGTCTGACCGCAAAAAAGCAATTTCTGAAATCA 640
.||.||.||||||....|....||||||||||||||.|||||.||.||.|
BL02305___rpe 591 ATCTGCCGTTTATAACGAAAAAGACCGCAAAAAAGCCATTTCCGATATAA 640
BSNT_02593___ 641 GAGG-------AAGTAAATAA 654
.||| ..||||
BL02305___rpe 641 AAGGTGCGCTTGGGTAA---- 657
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