Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02588 and BL02300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_02588___yloN.1.5803.seq
# -bsequence dna-align/BL02300___yloN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02588___yloN-BL02300___yloN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02588___yloN-BL02300___yloN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02588___yloN
# 2: BL02300___yloN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1108
# Identity: 879/1108 (79.3%)
# Similarity: 879/1108 (79.3%)
# Gaps: 38/1108 ( 3.4%)
# Score: 3526.5
#
#
#=======================================
BSNT_02588___ 1 ATGGCAGAACTTAAT--AAAACAAAAGTAAGAAAAGAATTGCGGACAGAG 48
|||| ||| |||..|||||||||||||||||||||||||||.
BL02300___ylo 1 ATGG--------AATCGAAACAAAAAGTAAGAAAAGAATTGCGGACAGAA 42
BSNT_02588___ 49 CGTCCGTCGATTTATTCTTTTGAATTAGACGAAATTAAACAATGGCTGAC 98
.|.|||||.||.||||||||||||.||||.|||.|.|||...|||||..|
BL02300___ylo 43 AGACCGTCCATCTATTCTTTTGAAATAGAAGAACTGAAAAGCTGGCTATC 92
BSNT_02588___ 99 AGACAACGGAGAGAAACCGTTCCGTGCGGCTCAGATTTTTGAATGGCTAT 148
.||.|||||.|||||.||.|||||.||.||.||.||.||.||||||||||
BL02300___ylo 93 GGAAAACGGCGAGAAGCCATTCCGCGCCGCGCAAATATTCGAATGGCTAT 142
BSNT_02588___ 149 ATGAAAAACGCGTATCTTCTTTTGAAGAAATGACAAACCTCTCAAAGGAT 198
|.|||||..|.||..|.||.||||||.|.|||||||||||.|||||.||.
BL02300___ylo 143 ACGAAAAGAGAGTCACGTCATTTGAAAAGATGACAAACCTTTCAAAAGAG 192
BSNT_02588___ 199 CTGCGTGAGAAA--TTAAACACTCACTTTGTGTTAACAACGCTGAAAACG 246
||||| ||.||| |.||..| .||.||.||.|||||.||||||||||||
BL02300___ylo 193 CTGCG-GACAAAGCTGAATGA-GCATTTCGTATTAACGACGCTGAAAACG 240
BSNT_02588___ 247 GCTGTTAAACAAACCTCTCAAGACGGTACGATGAAGTTTTTGTTTGAGCT 296
||.||.|||||.||.||.|||||.||.||.|||||||||||.||.|||||
BL02300___ylo 241 GCCGTCAAACAGACTTCCCAAGATGGAACAATGAAGTTTTTATTCGAGCT 290
BSNT_02588___ 297 TCATGACGGTTATACCATCGAAACCGTTTTAATGAGACACGAGTATGGCA 346
|||||||||.||.||.|||||.|||||.||||||.|.|||||.|||||||
BL02300___ylo 291 TCATGACGGCTACACGATCGAGACCGTATTAATGCGGCACGAATATGGCA 340
BSNT_02588___ 347 ATTCTGTATGTGTAACGACACAAGTCGGCTGCCGTATTGGCTGTACATTC 396
|||||||.||||||||||||||.||.||||||||.||.||||||||.|||
BL02300___ylo 341 ATTCTGTTTGTGTAACGACACAGGTGGGCTGCCGGATCGGCTGTACGTTC 390
BSNT_02588___ 397 TGTGCGTCAACGCTTGGAGGCTTAAAACGAAACCTTGAAGCGGGGGAAAT 446
||.||.||.||.||.||.||||||||.||.|||||.|||||.||.||.||
BL02300___ylo 391 TGCGCATCGACCCTCGGCGGCTTAAAGCGGAACCTGGAAGCCGGAGAGAT 440
BSNT_02588___ 447 TGTCGCTCAAGTAGTCAAAGTGCAAAAAGCTCTTGATGAAACGGATGAAC 496
.|||||.||.||.|||||||||||..|.||.|||||||||||.|||||||
BL02300___ylo 441 CGTCGCACAGGTTGTCAAAGTGCAGCAGGCGCTTGATGAAACAGATGAAC 490
BSNT_02588___ 497 GCGTCAGCTCTGTCGTGATCATGGGAATCGGCGAACCTTTTGATAACTTT 546
||||||||||..||||.||.||||||||||||||.||.||.|||||.|||
BL02300___ylo 491 GCGTCAGCTCAATCGTCATTATGGGAATCGGCGAGCCGTTCGATAATTTT 540
BSNT_02588___ 547 AACGAAATGCTCGCTTTCTTGAAAATCATTAACCATGACAAGGGCCTGAA 596
.|.||||||||.||.||||||||||||.|.||||||||.||.||.|||||
BL02300___ylo 541 CAGGAAATGCTTGCGTTCTTGAAAATCGTCAACCATGATAAAGGACTGAA 590
BSNT_02588___ 597 TATCGGTGCTCGCCATATTACGGTCTCTACGAGTGGAATCATCCCGAAAA 646
||||||.||.||||||||.||.||.||.|||||.||.|||||.|||||||
BL02300___ylo 591 TATCGGAGCGCGCCATATCACCGTATCAACGAGCGGGATCATTCCGAAAA 640
BSNT_02588___ 647 TTTACGAATTTGCTGATCAGCAAA--TGCAGATTAACTTTGCAATTTCTC 694
|.|||||.|||||.|| .|.||| |||||||.||||||||.|||||||
BL02300___ylo 641 TCTACGAGTTTGCAGA--CGAAAAGCTGCAGATCAACTTTGCGATTTCTC 688
BSNT_02588___ 695 TGCACGCGCCGAACACAGAAATCAGAAGCCGTTTGATGCCGATTAACAGA 744
||||||||||||||||.||.|||||||||||..||||||||||.||||||
BL02300___ylo 689 TGCACGCGCCGAACACTGAGATCAGAAGCCGGCTGATGCCGATCAACAGA 738
BSNT_02588___ 745 GCATATAAACTGCCTGATCTAATGGAAGCCGTTAAATATTATATTAATAA 794
||.||.||.|||||.|||||.|||.||||.||..|.||.||.|||||.||
BL02300___ylo 739 GCCTACAAGCTGCCCGATCTGATGAAAGCGGTCGATTACTACATTAAGAA 788
BSNT_02588___ 795 AACGGG----------ACGCCGCATCAGCTTTGAATACGGGCTGTTCGGA 834
|||.|| ||| ||||||||||||||.|||||.
BL02300___ylo 789 AACCGGCAGAAGGGTTACG----------TTTGAATACGGGCTTTTCGGC 828
BSNT_02588___ 835 GGCGTAAACGACCAGGTGGAACACGCCGAAGAGCTTGCCGACTTGCTGGA 884
||.||.|||||.|||||.||||||||.||||||||.||.||.|||||..|
BL02300___ylo 829 GGTGTCAACGATCAGGTTGAACACGCGGAAGAGCTGGCTGAATTGCTAAA 878
BSNT_02588___ 885 AGGAGTCAAATGCCACGTGAACTTGATTCCGGTAAACTACGTGCCTGAAC 934
||||.|||||||||||||.||||||||||||||.|||||.||.|||||||
BL02300___ylo 879 AGGAATCAAATGCCACGTCAACTTGATTCCGGTCAACTATGTACCTGAAC 928
BSNT_02588___ 935 GGGACTATGTGCGCACACCGCGTGATCAGATTTTTGCTTTTGAAAAAACG 984
|.||||||||..|.||||||...||.||||||||.||.|||||||||||.
BL02300___ylo 929 GAGACTATGTCAGAACACCGAAAGAACAGATTTTCGCCTTTGAAAAAACA 978
BSNT_02588___ 985 CTGAAATCCCGCGGAGTAAATGTCACAATCCGAAGAGAGCAAGGACATGA 1034
.|.||.||.|..||||||||||||||.|||.|||||||||||||.|||||
BL02300___ylo 979 TTAAAGTCTCATGGAGTAAATGTCACGATCAGAAGAGAGCAAGGCCATGA 1028
BSNT_02588___ 1035 CATTGACGCAGCCTGCGGTCAGCTTCGCGCGAAGGAGCGTCAAGACGAGA 1084
.||||||||.||||||||.||||||||.||.||||||||.||.||.||||
BL02300___ylo 1029 TATTGACGCTGCCTGCGGACAGCTTCGTGCAAAGGAGCGCCAGGAAGAGA 1078
BSNT_02588___ 1085 CGAGGTGA 1092
||||||||
BL02300___ylo 1079 CGAGGTGA 1086
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